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A Unified Model for Cross-Domain Clone Detection via Model Merging
Authors:
Palash R. Roy,
Banani Roy,
Kevin A. Schneider,
Chanchal K. Roy
Abstract:
The growing diversity of code clone types, from syntactic copies to cross-language semantic clones to AI-generated duplicates, has created a fragmentation crisis in clone detection. Current deep learning detectors are domain specialists that degrade significantly outside their training distribution, with F1 drops exceeding 70% across domains. Deploying multiple specialized models is impractical, y…
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The growing diversity of code clone types, from syntactic copies to cross-language semantic clones to AI-generated duplicates, has created a fragmentation crisis in clone detection. Current deep learning detectors are domain specialists that degrade significantly outside their training distribution, with F1 drops exceeding 70% across domains. Deploying multiple specialized models is impractical, yet training a single cross-domain detector requires simultaneous access to all training data. To address this, we investigate model merging, a family of post-hoc techniques that operate solely on trained checkpoints. We evaluate parameter merging with five task-vector methods, architecture merging via greedy layer stitching, and cross-tokenizer alignment across four code models, three benchmarks, and twelve configurations. Same-base TIES merging creates effective cross-domain detectors, validated across two model families and three random seeds, reaching 0.865 combined F1 on UniXcoder, 93% of multi-task performance without any training data at the merging step. WUDI achieves the highest in-distribution combined F1 at 0.899, but TIES generalizes better to unseen AI-generated clones, making it our recommended method. Cross-base merging yields only marginal and high-variance gains across all five methods, indicating that task vector compatibility through a shared pre-trained base is the binding factor for effective merging. Merged detectors also outperform zero-shot code LLMs on GPTCloneBench at lower inference cost and generalize up to 4x better than multi-task training to unseen AI-generated clones, suggesting a trade-off between in-domain performance and OOD robustness. This work provides one of the first systematic empirical studies of model merging for software engineering and a practical recipe for building cross-domain clone detectors.
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Submitted 4 August, 2026;
originally announced August 2026.
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MergeSE: Post-Hoc Model Merging for Software Engineering Tasks Without Retraining
Authors:
Palash R. Roy,
Banani Roy,
Kevin A. Schneider,
Chanchal K. Roy
Abstract:
Fine-tuned code models often behave as domain specialists and can degrade sharply under distribution shift: in our clone-detection setting, a model trained on same-language clones drops 71\% F1 on cross-language clones, while multi-task training falls to 0.151 F1 on unseen AI-generated clones. Our companion study shows that post-hoc model merging can address this fragmentation, achieving 93\% of m…
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Fine-tuned code models often behave as domain specialists and can degrade sharply under distribution shift: in our clone-detection setting, a model trained on same-language clones drops 71\% F1 on cross-language clones, while multi-task training falls to 0.151 F1 on unseen AI-generated clones. Our companion study shows that post-hoc model merging can address this fragmentation, achieving 93\% of multi-task performance without training data while generalizing 4$\times$ better to unseen clone types. However, no practical tool exists that lets SE researchers diagnose checkpoint compatibility, merge specialists, validate results on SE benchmarks, and export models for deployment. We present \textbf{MergeSE}, an open-source CLI and web tool for training-free model merging of HuggingFace encoder checkpoints. While motivated by OOD generalization in clone detection, MergeSE supports SE classification workflows more broadly through a built-in registry of nine task types, including vulnerability detection, defect prediction, and code-smell detection. MergeSE provides five operations: \textit{tasks}, \textit{inspect}, \textit{merge}, \textit{evaluate}, and \textit{export}. It supports five merging algorithms, including TIES, DARE-TIES, Wudi, PCB, and averaging; detects cross-task classification-head mismatches; produces seedable deterministic outputs; and includes bundled benchmark samples for smoke-test reproduction. A full merge of two 124M-parameter checkpoints completes in under 5 seconds on CPU. End-to-end validation confirms that MergeSE-produced checkpoints match reference implementations and recover cross-domain performance from domain-specific specialists. The tool is available online at https://mergese.usask.ca, and the development repository is at https://github.com/srlabUsask/MergeSE.
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Submitted 4 August, 2026;
originally announced August 2026.
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MEDA: Measurement-Efficient Disorder-Aware Majorana Zero Mode Detection in Realistic Devices
Authors:
Nathan Jones,
Binayyak Roy,
Valentine Mohaugen,
Ian Lewis,
Toby Cox,
Sumanta Tewari,
Rong Ge
Abstract:
Fault-tolerant topological quantum computing relies on identifying Majorana zero modes (MZMs), but reliable detection in realistic devices remains challenging. Conventional topological indicators are inherently biased in finite, disordered systems, blurring the distinction between true MZMs and trivial states. Furthermore, attempts to map these indicators to real observables via machine learning r…
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Fault-tolerant topological quantum computing relies on identifying Majorana zero modes (MZMs), but reliable detection in realistic devices remains challenging. Conventional topological indicators are inherently biased in finite, disordered systems, blurring the distinction between true MZMs and trivial states. Furthermore, attempts to map these indicators to real observables via machine learning require dense, expensive conductance measurements, creating a severe scaling bottleneck. To simultaneously address topological bias and measurement limitations, we present MEDA: a Measurement-Efficient, Disorder-Aware framework for MZM detection in realistic devices. MEDA maps sparse, practically obtainable observables directly to the robust periodic disorder invariant (PDI). Using a novel sparse parameter regime, MEDA reduces measurement volume by 10x while maintaining predictive quality, even in moderate to strong disorder regimes that limit conventional methods. Furthermore, MEDA naturally prioritizes input features consistent with the topological gap protocol, demonstrating strong physical interpretability.
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Submitted 16 August, 2026; v1 submitted 28 July, 2026;
originally announced July 2026.
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WorldDiT: A Unified Diffusion Architecture for World and Action Modeling
Authors:
Sen Wang,
R. Gnana Praveen,
Bidhan Roy,
Marcos Villagra
Abstract:
Many recent robot policies pursue stronger control by using large pretrained vision-language models (VLMs) as the action backbone. We introduce WorldDiT, a unified diffusion transformer architecture that couples action generation with visual world modeling and achieves strong performance without a large pretrained VLM action backbone. During training, a single diffusion transformer generates conti…
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Many recent robot policies pursue stronger control by using large pretrained vision-language models (VLMs) as the action backbone. We introduce WorldDiT, a unified diffusion transformer architecture that couples action generation with visual world modeling and achieves strong performance without a large pretrained VLM action backbone. During training, a single diffusion transformer generates continuous action chunks and predicts normalized RGB patch targets from future camera frames. Across four LIBERO simulation suites, WorldDiT lies on the reported Pareto frontier for total model parameters and mean success among methods reporting all four suites. These results provide a strong sub-billion-parameter baseline for future scaling studies.
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Submitted 31 July, 2026; v1 submitted 26 July, 2026;
originally announced July 2026.
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"Go Home Copilot, You're Drunk": Understanding Developer Responses to Agent-Generated Code Review Comments
Authors:
Shamse Tasnim Cynthia,
Ratnadira Widyasari,
Banani Roy,
Ting Zhang,
David Lo
Abstract:
Code review is a critical quality assurance practice in software engineering development, and AI coding agents are increasingly generating review comments on pull requests. However, little is known about how developers actually respond to such agent-generated feedback. In this paper, we present the first large-scale empirical study on the resolution of agent-generated code review comments. We anal…
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Code review is a critical quality assurance practice in software engineering development, and AI coding agents are increasingly generating review comments on pull requests. However, little is known about how developers actually respond to such agent-generated feedback. In this paper, we present the first large-scale empirical study on the resolution of agent-generated code review comments. We analyze $54{,}791$ comments generated by five widely used coding agents (i.e., Copilot, Cursor, Codex, Devin, and Claude) across $342$ Python repositories on GitHub. We examine (1) resolution rates across agents and comment types, (2) the role of developer experience, and (3) characteristics that influence comment usefulness. Our results show that resolution rate varies considerably across agents, with Copilot accounting for the majority of resolved comments (72.9\%). Core developers resolve the majority of agent-generated feedback, particularly for \textit{design} and \textit{evolvability}-related comments, while peripheral developers are more involved in resolving \textit{functional defect} comments. Through open card sorting of 470 unresolved comment discussions, we identify \textit{ten} discussion patterns explaining why comments remain unresolved, with \textit{incorrect suggestions} and \textit{intentional design decisions} being the most prevalent. Finally, our analysis reveals that the presence of an inline \textit{code suggestion} is the strongest predictor of comment resolution, while lengthy and complex comments are less likely to be acted upon. Our findings provide insights for improving AI-generated code review feedback and its integration into development workflows.
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Submitted 29 July, 2026; v1 submitted 24 July, 2026;
originally announced July 2026.
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Understanding Developer Pain Points in Federated Learning: Insights from Stack Overflow and GitHub
Authors:
Sahand Saed,
Khairul Alam,
Banani Roy
Abstract:
Federated Learning (FL) enables collaborative model training without centralizing raw data, but building and operating FL systems remains difficult due to distributed execution, rapidly evolving frameworks, and privacy and governance requirements. In this paper, we present an empirical study of FL developer challenges by independently analyzing 495 Stack Overflow posts and 9,116 GitHub issues and…
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Federated Learning (FL) enables collaborative model training without centralizing raw data, but building and operating FL systems remains difficult due to distributed execution, rapidly evolving frameworks, and privacy and governance requirements. In this paper, we present an empirical study of FL developer challenges by independently analyzing 495 Stack Overflow posts and 9,116 GitHub issues and pull requests from 92 FL-related projects. Using BERTopic-based topic modeling and difficulty indicators such as unresolved rates and median resolution time, we characterize recurring problem areas and compare how they manifest across the two support platforms, Stack Overflow and GitHub. Our analysis surfaces nine dominant Stack Overflow topics and thirteen GitHub topics, with persistent difficulties concentrated in environment setup and dependency compatibility, API breakages and migration, training instability under non-IID data, evaluation and metric correctness, and the integration of privacy-preserving mechanisms. We also categorize posts by question intent to understand the kinds of help developers seek; this intent analysis shows that "How"-type questions dominate, reflecting strong demand for procedural guidance. Several topics, such as "TFF Installation and Environment Compatibility" and "Federated Feature Engineering and SecureBoost Issues," exhibit high unresolved rates and long resolution times, suggesting shortcomings in tooling, documentation, and debugging support. Based on these findings, we provide actionable implications for FL framework designers, documentation authors, and educators. Although our results are constrained to public discussions and a subset of widely discussed frameworks, the study offers a scalable method for continuously monitoring developer pain points and improving the usability, reliability, and deployability of FL systems.
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Submitted 21 July, 2026;
originally announced July 2026.
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Maintenance and Support in Community-Driven Scientific Pipeline Ecosystems: A Cross-Platform Empirical Study of nf-core
Authors:
Khairul Alam,
Kowsik Roy,
Md Shamimur Rahman,
Banani Roy
Abstract:
Community-driven scientific pipeline ecosystems are increasingly important for reproducible data-intensive research, but their sustainability depends on more than workflow engines, templates, and testing infrastructure. It also depends on how communities maintain pipelines, integrate contributions, and support users across heterogeneous execution environments. This paper presents a cross-platform…
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Community-driven scientific pipeline ecosystems are increasingly important for reproducible data-intensive research, but their sustainability depends on more than workflow engines, templates, and testing infrastructure. It also depends on how communities maintain pipelines, integrate contributions, and support users across heterogeneous execution environments. This paper presents a cross-platform empirical study of maintenance and support in nf-core, a large ecosystem of standardized Nextflow pipelines. We analyze 15,760 GitHub issues, 35,411 GitHub pull requests, and 895 Seqera Community Forum discussions to examine what maintenance and support concerns arise, how they differ across artifact types, which factors are associated with resolution outcomes, and how problems and solutions flow between repository-centered and community-centered spaces. We find that issues primarily capture repository-level problem reporting and maintenance coordination; pull requests capture implementation, review, testing, dependency, and template-update work; and forum discussions capture user-facing support around execution failures, containers, cloud and HPC environments, MultiQC reporting, and Nextflow usage. Resolution outcomes are associated with actionability, coordination, and diagnostic evidence. Issue closure is linked to assignees, comments, milestones, bug labels, error mentions, and version information. Pull request integration varies by author role, automation type, draft status, checklists, linked issues, and review routing. Forum accepted answers are more likely when discussions include code blocks, sustained interaction, and concrete technical evidence, while cloud, HPC, and workflow-semantics questions are harder to resolve. Cross-platform analysis reveals strong repository-internal traceability within GitHub, but limited explicit linkage between forum discussions and repository artifacts.
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Submitted 12 July, 2026;
originally announced July 2026.
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From Generic to Personalized: Exploring Persona-Aware Code Review Explanations
Authors:
Shamse Tasnim Cynthia,
Ratnadira Widyasari,
Banani Roy,
Italo Santos,
David Lo
Abstract:
Code review is essential for ensuring software quality and supporting collaboration, yet prior work shows that developers can interpret code review comments differently. These differences can hinder effective communication, particularly in collaborative settings. To address this challenge, we explore the potential of personified code review explanations. We report initial findings from an ongoing…
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Code review is essential for ensuring software quality and supporting collaboration, yet prior work shows that developers can interpret code review comments differently. These differences can hinder effective communication, particularly in collaborative settings. To address this challenge, we explore the potential of personified code review explanations. We report initial findings from an ongoing mixed-methods user study in which developers evaluated persona-aligned review comments across multiple code snippets. Our results suggest that preferences for explanation styles vary across problem-solving styles, experience levels, and roles. Across problem-solving style profiles, developers valued explanatory depth, learning support, practical suggestions, and risk awareness over conciseness, highlighting the need to balance personalization with clarity and trust. Based on these findings, we outline a vision for inclusive, human-centered AI-assisted code review systems that adapt feedback to developers' problem-solving preferences.
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Submitted 9 July, 2026;
originally announced July 2026.
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ASMR: Agentic Schema Generation for Ship Maintenance Report Writing
Authors:
Sohrab Namazi Nia,
Amogh Dalal,
Ning Sa,
Peter Ly,
Marti Zentmaier,
Tomek Strzalkowski,
Jay Miller,
Rishi Singh,
Senjuti Basu Roy
Abstract:
In this paper, we study the automatic schema generation problem: given a collection of historical ship maintenance and operational reports across multiple form categories, automatically discover compact and informative schemas that capture the essential information requirements of each report type. To address this challenge, we propose ASMR, a modular agentic framework consisting of two specialize…
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In this paper, we study the automatic schema generation problem: given a collection of historical ship maintenance and operational reports across multiple form categories, automatically discover compact and informative schemas that capture the essential information requirements of each report type. To address this challenge, we propose ASMR, a modular agentic framework consisting of two specialized agents. A Field Generation Agent extracts semantic concepts from historical narratives and generates candidate schema fields through adaptive multi-granularity clustering, while a Structural Optimizer Agent employs reinforcement learning to identify compact, informative, and non-redundant schema representations. The resulting schemas can guide report authors toward producing more complete, consistent, and actionable reports. Preliminary results demonstrate the promise of the proposed approach and highlight several open research challenges at the intersection of data management, agentic AI, and human-centered AI.
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Submitted 9 July, 2026;
originally announced July 2026.
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Simultaneously Efficient Allocation of Indivisible Items Across Multiple Dimensions
Authors:
Yasushi Kawase,
Bodhayan Roy,
Mohammad Azharuddin Sanpui
Abstract:
Many allocation problems are intrinsically multidimensional, since an item may contribute differently to several criteria, and optimizing a single aggregate objective can hide severe losses in other dimensions. We study how much efficiency can be guaranteed simultaneously when indivisible items have multiple attributes. To this end, we introduce the \emph{multidimensional efficient allocation} (MD…
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Many allocation problems are intrinsically multidimensional, since an item may contribute differently to several criteria, and optimizing a single aggregate objective can hide severe losses in other dimensions. We study how much efficiency can be guaranteed simultaneously when indivisible items have multiple attributes. To this end, we introduce the \emph{multidimensional efficient allocation} (MDEA) model, where each agent has an additive valuation in each dimension, and investigate simultaneous efficiency under utilitarian social welfare (USW) and egalitarian social welfare (ESW). Our results reveal a sharp worst-case frontier. For exact efficiency, maximizing the number of dimensions attaining the USW optimum admits a $c/\ell$-approximation for every fixed constant $c$, and this dependence on the number $\ell$ of dimensions is essentially unavoidable; for ESW, even deciding whether two dimensions can be optimized simultaneously is NP-hard with binary valuations. For approximate simultaneous efficiency in every dimension, we identify a tight threshold of order $1/\ell$, showing that such guarantees always exist for both USW and ESW, while any asymptotically better dependence on $\ell$ is impossible, even for binary valuations. Finally, we introduce three natural multidimensional Pareto notions and characterize both their relationships and their computational complexity.
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Submitted 19 June, 2026;
originally announced June 2026.
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An Information-Theoretic Definition for Open-Ended Learning
Authors:
Wanqiao Xu,
Yifan Zhu,
Benjamin Van Roy
Abstract:
A growing body of work points to the great promise of AI systems that can continually expand their capabilities as they operate in an open-ended environment. But yet there is no coherent definition of open-endedness or theory about how an agent ought to explore an open-ended environment. We introduce an information-theoretic definition based on a new concept -- the ${\textit bit-equivalent}$ -- wh…
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A growing body of work points to the great promise of AI systems that can continually expand their capabilities as they operate in an open-ended environment. But yet there is no coherent definition of open-endedness or theory about how an agent ought to explore an open-ended environment. We introduce an information-theoretic definition based on a new concept -- the ${\textit bit-equivalent}$ -- which quantifies the information required to attain each level of expected reward. We consider an environment to be open-ended if an agent can attain linear growth in the bit-equivalent. We establish that classical bandit environments are not open-ended and formulate a bandit environment that is. We also introduce an algorithm that achieves open-ended learning in this environment.
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Submitted 6 June, 2026;
originally announced June 2026.
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Reinforcement Learning with Pairwise Preferences in Long-Term Decision Problems
Authors:
Jonathan Colaço Carr,
Prakash Panangaden,
Doina Precup,
Benjamin Van Roy
Abstract:
Reinforcement learning with scalar rewards is widely used for aligning machine-learning systems with user preferences. But, pairwise preferences are often more natural for users to specify than scalar rewards, and they express certain goals that scalar rewards cannot. Methods for reinforcement learning with pairwise preferences have thus received growing interest. Unfortunately, these methods are…
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Reinforcement learning with scalar rewards is widely used for aligning machine-learning systems with user preferences. But, pairwise preferences are often more natural for users to specify than scalar rewards, and they express certain goals that scalar rewards cannot. Methods for reinforcement learning with pairwise preferences have thus received growing interest. Unfortunately, these methods are inefficient in problems with long time horizons, and they lack guarantees on the performance of Markov policies relative to history-dependent policies, which bridge the theory and practice of reinforcement learning. We address these limitations in a new problem setting for reinforcement learning with pairwise preferences called the \textit{Markov decision contest}. In this setting, we prove that stationary Markov policies perform just as well as history-dependent policies; that the problem of recovering an optimal policy exactly is in P; and that a simple iterative algorithm converges to an optimal policy at a sublinear rate. Lastly, we implement a deep-learning variant of our iterative algorithm and demonstrate its efficiency in long-term decision problems that require function approximation.
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Submitted 13 August, 2026; v1 submitted 29 May, 2026;
originally announced June 2026.
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Paris 2.0: A Decentralized Diffusion Model for Video Generation
Authors:
Ali Rouzbayani,
Bidhan Roy,
Marcos Villagra,
Zhiying Jiang
Abstract:
We present Paris 2.0, the first video generation model pre-trained through decentralized computation. Its training recipe builds upon Paris 1.0 (arXiv:2510.03434), the first ever open-weight Decentralized Diffusion Model (DDM), which showed that image generation can be trained without a monolithic GPU cluster. However, temporally coherent video generation had remained an open problem under decentr…
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We present Paris 2.0, the first video generation model pre-trained through decentralized computation. Its training recipe builds upon Paris 1.0 (arXiv:2510.03434), the first ever open-weight Decentralized Diffusion Model (DDM), which showed that image generation can be trained without a monolithic GPU cluster. However, temporally coherent video generation had remained an open problem under decentralized training, and Paris 2.0 closes it.
In low-resolution text-to-video training, against a monolithic model trained on the same data under a matched total compute budget, Paris 2.0 cuts Frechet Video Distance (FVD) from 561.04 to 279.01, a ~2.0x improvement, and lifts CLIP text-video similarity and aesthetic score.
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Submitted 28 May, 2026; v1 submitted 25 May, 2026;
originally announced May 2026.
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TuniQ: Autotuning Compilation Passes for Quantum Workloads at Scale for Effectiveness and Efficiency
Authors:
Mohammad Abrarul Hasanat,
Jason Ludmir,
Tirthak Patel,
Rohan Basu Roy
Abstract:
Quantum processors are being integrated into HPC ecosystems as co-processors, where compilation of quantum circuits into hardware-executable form determines both output fidelity and runtime. Current compilers use a fixed pass sequence and ignore the fact that optimal pass selection varies with circuit, hardware, and noise conditions. We present TuniQ, a reinforcement learning-based system that sel…
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Quantum processors are being integrated into HPC ecosystems as co-processors, where compilation of quantum circuits into hardware-executable form determines both output fidelity and runtime. Current compilers use a fixed pass sequence and ignore the fact that optimal pass selection varies with circuit, hardware, and noise conditions. We present TuniQ, a reinforcement learning-based system that selects compilation passes at each pipeline stage, adapting to circuit, backend, and current noise profile. TuniQ introduces several novel design components like a dual-encoder for stage-aware representation, shaped rewards for cross-stage credit assignment, and dynamic action masking for valid compilation. Evaluated across diverse quantum workloads on multiple IBM Quantum Cloud processors, TuniQ improves fidelity and reduces compilation time over the state-of-the-art IBM Qiskit transpiler, generalizes across backends without retraining, and scales strongly to utility-scale circuits with growing advantage.
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Submitted 11 May, 2026;
originally announced May 2026.
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Witness Set: A Visibility Problem in $NP\cap XP$
Authors:
Satyabrata Jana,
Debabrata Pal,
Bodhayan Roy,
Sasanka Roy
Abstract:
We study the Witness Set problem, a natural dual to the classical Art Gallery problem. In the Witness Set problem, we are given a polygon $P$ and an integer $k$ as input, and the objective is to determine whether $P$ has a witness set of size at least $k$. A point set $X$ in $P$ is called a witness set if every point in $P$ is visible from at most one point in $X$.
For simple polygons, we show t…
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We study the Witness Set problem, a natural dual to the classical Art Gallery problem. In the Witness Set problem, we are given a polygon $P$ and an integer $k$ as input, and the objective is to determine whether $P$ has a witness set of size at least $k$. A point set $X$ in $P$ is called a witness set if every point in $P$ is visible from at most one point in $X$.
For simple polygons, we show that Witness Set lies in both $NP$ and $XP$. This stands in sharp contrast to its dual, the Art Gallery problem, which was recently shown to be $\exists \mathbb{R}$-complete by Abrahamsen et al. and is therefore neither in $NP$ nor admits a polynomial-size discretization unless $NP=\exists \mathbb{R}$. In contrast, we prove that Witness Set for simple polygons admits a finite discretization of size $n^{f(k)}$ for some function $f$.
For comparison, even for simple polygons, Efrat and Har-Peled gave an algorithm for Art Gallery running in time $n^{O(k)}$ using tools from real algebraic geometry, and it appears difficult to obtain such algorithms without this machinery. On the other hand, our approach for Witness Set is purely combinatorial and relies on discretization, leading to an $n^{f(k)}$-time algorithm.
Although Amit et al. claimed more than fifteen years ago that Witness Set is $NP$-hard, no proof or reference was provided. We show that the discrete version of the Witness Set problem - where the witness set must be chosen from a given finite point set $Q$ (instead of allowing witnesses to be chosen anywhere in the polygon), referred to as Discrete Witness Set - is $NP$-complete, even when the input is restricted to rectilinear polygons with holes. However, for simple polygons, Discrete Witness Set admits a polynomial-time algorithm by Das et al. Thus, it remains an open question whether the Witness Set problem is $NP$-hard.
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Submitted 2 May, 2026;
originally announced May 2026.
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NLPOpt-Net: A Learning Method for Nonlinear Optimization with Feasibility Guarantees
Authors:
Bimol Nath Roy,
Rahul Golder,
MM Faruque Hasan
Abstract:
Nonlinear Parametric Optimization Network (NLPOpt-Net) is an unsupervised learning architecture to solve constrained nonlinear programs (NLP). Given the structure of an NLP, it learns the parametric solution maps with guaranteed constraint satisfaction. The architecture consists of a backbone neural network (NN) followed by a multilayer ($k$-layered) projection. While the NN drives toward optimali…
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Nonlinear Parametric Optimization Network (NLPOpt-Net) is an unsupervised learning architecture to solve constrained nonlinear programs (NLP). Given the structure of an NLP, it learns the parametric solution maps with guaranteed constraint satisfaction. The architecture consists of a backbone neural network (NN) followed by a multilayer ($k$-layered) projection. While the NN drives toward optimality through a loss function consisting of a modified Lagrangian augmented with a consistency loss, the projection ensures feasibility by projecting the NN predictions in the original constraint manifold. Instead of typical distance minimization, our projection exploits local quadratic approximations of the original NLP. Under certain conditions (such as convexity), the projection has a descent property, which improves the NN predictions further. NLPOpt-Net deploys an inversion-free, modified Chambolle-Pock algorithm to solve the constrained quadratic projections during the forward pass and uses the implicit function theorem for efficient backpropagation. The fixed structure of the projection further allows decoupling of the NN and the projection once the training is complete. NLPOpt-Net solves large-scale convex QP, QCQP, NLP, and nonconvex problems with near zero optimality gap and constraint violations reduced to machine precision. Additionally, it provides near accurate prediction of the active sets and corresponding dual variables, thereby enabling a scalable approach for multiparametric programming. Compiling the projection in C provides order of magnitude improvement in inference time compared to JAX. We provide the codes and NLPOpt-Net as a ready to use package that includes GPU support.
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Submitted 30 April, 2026;
originally announced May 2026.
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Carbon-Taxed Transformers: A Green Compression Pipeline for Overgrown Language Models
Authors:
Ajmain Inqiad Alam,
Palash Roy,
Chanchal K. Roy,
Banani Roy,
Kevin A. Schneider
Abstract:
The accelerating adoption of Large Language Models (LLMs) in software engineering (SE) has brought with it a silent crisis: unsustainable computational cost. While these models demonstrate remarkable capabilities in different SE tasks, they are unmanageably large, slow to deploy, memory-intensive, and carbon-heavy. This reality threatens not only the scalability and accessibility of AI-powered SE,…
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The accelerating adoption of Large Language Models (LLMs) in software engineering (SE) has brought with it a silent crisis: unsustainable computational cost. While these models demonstrate remarkable capabilities in different SE tasks, they are unmanageably large, slow to deploy, memory-intensive, and carbon-heavy. This reality threatens not only the scalability and accessibility of AI-powered SE, but also its long-term environmental sustainability. The research challenge is clear: we must go beyond accuracy and address efficiency and environmental cost as first-class design constraints. To meet this challenge, we introduce Carbon-Taxed Transformers (CTT), a systematic multi-architectural compression principled pipeline ordering inspired by economic carbon taxation principles. Drawing from the economic concept of carbon pricing, CTT operationalizes a computational carbon tax that penalizes architectural inefficiencies and rewards deployment-ready compression. We evaluate CTT across three core SE tasks: code clone detection, code summarization, and code generation, with models spanning encoder-only, encoder-decoder, and decoder-only architecture. Our results show that CTT delivers on inference: (1) up to 49x memory reduction, (2) time reduction up to 8-10x for clone detection, up to 3x for summarization, and 4-7x for generation, (3) up to 81% reduction in CO2 emissions and (4) CTT retains around 98% accuracy on clone detection, around 89% on summarization, and up to 91% (textual metrics) and 68% (pass@1) for generation. Two ablation studies show that pipeline ordering and individual component contributions are both essential, providing empirical justification for CTT's design and effectiveness. This work establishes a viable path toward responsible AI in SE through aggressive yet performance-preserving compression.
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Submitted 28 April, 2026;
originally announced April 2026.
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HarmChip: Evaluating Hardware Security Centric LLM Safety via Jailbreak Benchmarking
Authors:
Zeng Wang,
Minghao Shao,
Weimin Fu,
Prithwish Basu Roy,
Xiaolong Guo,
Ramesh Karri,
Muhammad Shafique,
Johann Knechtel,
Ozgur Sinanoglu
Abstract:
The integration of large language models (LLMs) into electronic design automation (EDA) workflows has introduced powerful capabilities for RTL generation, verification, and design optimization, but also raises critical security concerns. Malicious LLM outputs in this domain pose hardware-level threats, including hardware Trojan insertion, side-channel leakage, and intellectual property theft, that…
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The integration of large language models (LLMs) into electronic design automation (EDA) workflows has introduced powerful capabilities for RTL generation, verification, and design optimization, but also raises critical security concerns. Malicious LLM outputs in this domain pose hardware-level threats, including hardware Trojan insertion, side-channel leakage, and intellectual property theft, that are irreversible once fabricated into silicon. Such requests often exploit semantic disguise, embedding adversarial intent within legitimate engineering language that existing safety mechanisms, trained on general-purpose hazards, fail to detect. No benchmark exists to evaluate LLM vulnerability to such domain-specific threats. We present the HarmChip benchmark to assess jailbreak susceptibility in hardware security, spanning 16 hardware security domains, 120 threats, and 360 prompts at two difficulty levels. Evaluation of state-of-the-art LLMs reveals an alignment paradox: They refuse legitimate security queries while complying with semantically disguised attacks, exposing blind spots in safety guardrails and underscoring the need for domain-aware safety alignment.
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Submitted 18 April, 2026;
originally announced April 2026.
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VeriCWEty: Embedding enabled Line-Level CWE Detection in Verilog
Authors:
Prithwish Basu Roy,
Zeng Wang,
Anatolii Chuvashlov,
Weihua Xiao,
Johann Knechtel,
Ozgur Sinanoglu,
Ramesh Karri
Abstract:
Large Language Models (LLMs) have shown significant improvement in RTL code generation. Despite the advances, the generated code is often riddled with common vulnerabilities and weaknesses (CWEs) that can slip by untrained eyes. Attackers can often exploit these weaknesses to fulfill their nefarious motives. Existing RTL bug-detection techniques rely on rule-based checks, formal properties, or coa…
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Large Language Models (LLMs) have shown significant improvement in RTL code generation. Despite the advances, the generated code is often riddled with common vulnerabilities and weaknesses (CWEs) that can slip by untrained eyes. Attackers can often exploit these weaknesses to fulfill their nefarious motives. Existing RTL bug-detection techniques rely on rule-based checks, formal properties, or coarse-grained structural analysis, which either fail to capture semantic vulnerabilities or lack precise localization. In our work, we bridge this gap by proposing an embedding-based bug-detection framework that detects and classifies bugs at both module and line-level granularity. Our method achieves about 89% precision in identifying common CWEs such as CWE-1244 and CWE-1245, and 96% accuracy in detecting line-level bugs.
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Submitted 15 April, 2026;
originally announced April 2026.
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Efficient Exploration at Scale
Authors:
Seyed Mohammad Asghari,
Chris Chute,
Vikranth Dwaracherla,
Xiuyuan Lu,
Mehdi Jafarnia,
Victor Minden,
Zheng Wen,
Benjamin Van Roy
Abstract:
We develop an online learning algorithm that dramatically improves the data efficiency of reinforcement learning from human feedback (RLHF). Our algorithm incrementally updates reward and language models as choice data is received. The reward model is fit to the choice data, while the language model is updated by a variation of reinforce, with reinforcement signals provided by the reward model. Se…
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We develop an online learning algorithm that dramatically improves the data efficiency of reinforcement learning from human feedback (RLHF). Our algorithm incrementally updates reward and language models as choice data is received. The reward model is fit to the choice data, while the language model is updated by a variation of reinforce, with reinforcement signals provided by the reward model. Several features enable the efficiency gains: a small affirmative nudge added to each reinforcement signal, an epistemic neural network that models reward uncertainty, and information-directed exploration. With Gemma large language models (LLMs), our algorithm matches the performance of offline RLHF trained on 200K labels using fewer than 20K labels, representing more than a 10x gain in data efficiency. Extrapolating from our results, we expect our algorithm trained on 1M labels to match offline RLHF trained on 1B labels. This represents a 1,000x gain. To our knowledge, these are the first results to demonstrate that such large improvements are possible.
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Submitted 20 August, 2026; v1 submitted 18 March, 2026;
originally announced March 2026.
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Consequentialist Objectives and Catastrophe
Authors:
Henrik Marklund,
Alex Infanger,
Benjamin Van Roy
Abstract:
Because human preferences are too complex to codify, AIs operate with misspecified objectives. Optimizing such objectives often produces undesirable outcomes; this phenomenon is known as reward hacking. Such outcomes are not necessarily catastrophic. Indeed, most examples of reward hacking in previous literature are benign. And typically, objectives can be modified to resolve the issue.
We study…
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Because human preferences are too complex to codify, AIs operate with misspecified objectives. Optimizing such objectives often produces undesirable outcomes; this phenomenon is known as reward hacking. Such outcomes are not necessarily catastrophic. Indeed, most examples of reward hacking in previous literature are benign. And typically, objectives can be modified to resolve the issue.
We study the prospect of catastrophic outcomes induced by AIs operating in complex environments. We argue that, when capabilities are sufficiently advanced, pursuing a fixed consequentialist objective tends to result in catastrophic outcomes. We formalize this by establishing conditions that provably lead to such outcomes. Under these conditions, simple or random behavior is safe. Catastrophic risk arises due to extraordinary competence rather than incompetence.
With a fixed consequentialist objective, avoiding catastrophe requires constraining AI capabilities. In fact, constraining capabilities the right amount not only averts catastrophe but yields valuable outcomes. Our results apply to any objective produced by modern industrial AI development pipelines.
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Submitted 24 April, 2026; v1 submitted 16 March, 2026;
originally announced March 2026.
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Heterogeneous Decentralized Diffusion Models
Authors:
Zhiying Jiang,
Raihan Seraj,
Marcos Villagra,
Bidhan Roy
Abstract:
Training frontier-scale diffusion models often requires substantial computational resources concentrated in tightly-coupled clusters, limiting participation to well-resourced institutions. While Decentralized Diffusion Models (DDM) enable training multiple experts in isolation, existing approaches require 1176 GPU-days and homogeneous training objectives across all experts. We present an efficient…
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Training frontier-scale diffusion models often requires substantial computational resources concentrated in tightly-coupled clusters, limiting participation to well-resourced institutions. While Decentralized Diffusion Models (DDM) enable training multiple experts in isolation, existing approaches require 1176 GPU-days and homogeneous training objectives across all experts. We present an efficient framework that dramatically reduces resource requirements while supporting heterogeneous training objectives. Our approach combines three key contributions: (1) a heterogeneous decentralized training paradigm that allows experts to use different objectives (DDPM and Flow Matching), unified at inference time without any retraining; (2) pretrained checkpoint conversion from ImageNet-DDPM to Flow Matching objectives, accelerating convergence and enabling initialization without objective-specific pretraining; and (3) PixArt-$α$'s efficient AdaLN-Single architecture, reducing parameters while maintaining quality. Experiments on LAION-Aesthetics show that, relative to the training scale reported for prior DDM work, our approach reduces the compute by 16$\times$ and data by 14$\times$. Under aligned inference settings, our heterogeneous configuration achieves better FID and higher intra-prompt diversity than the homogeneous baseline. By eliminating synchronization requirements and enabling mixed DDPM/FM objectives, our framework makes decentralized generative model training accessible to contributors with single GPUs requiring only 24--48GB VRAM.
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Submitted 31 July, 2026; v1 submitted 6 March, 2026;
originally announced March 2026.
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Human-Data Interaction, Exploration, and Visualization in the AI Era: Challenges and Opportunities
Authors:
Jean-Daniel Fekete,
Yifan Hu,
Dominik Moritz,
Arnab Nandi,
Senjuti Basu Roy,
Eugene Wu,
Nikos Bikakis,
George Papastefanatos,
Panos K. Chrysanthis,
Guoliang Li,
Lingyun Yu
Abstract:
The rapid advancement of AI is transforming human-centered systems, with profound implications for human-AI interaction, human-data interaction, and visual analytics. In the AI era, data analysis increasingly involves large-scale, heterogeneous, and multimodal data that is predominantly unstructured, as well as foundation models such as LLMs and VLMs, which introduce additional uncertainty into an…
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The rapid advancement of AI is transforming human-centered systems, with profound implications for human-AI interaction, human-data interaction, and visual analytics. In the AI era, data analysis increasingly involves large-scale, heterogeneous, and multimodal data that is predominantly unstructured, as well as foundation models such as LLMs and VLMs, which introduce additional uncertainty into analytical processes. These shifts expose persistent challenges for human-data interactive systems, including perceptually misaligned latency, scalability constraints, limitations of existing interaction and exploration paradigms, and growing uncertainty regarding the reliability and interpretability of AI-generated insights. Responding to these challenges requires moving beyond conventional efficiency and scalability metrics, redefining the roles of humans and machines in analytical workflows, and incorporating cognitive, perceptual, and design principles into every level of the human-data interaction stack. This paper investigates the challenges introduced by recent advances in AI and examines how these developments are reshaping the ways users engage with data, while outlining limitations and open research directions for building human-centered AI systems for interactive data analysis in the AI era.
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Submitted 4 March, 2026;
originally announced March 2026.
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XMENTOR: A Rank-Aware Aggregation Approach for Human-Centered Explainable AI in Just-in-Time Software Defect Prediction
Authors:
Saumendu Roy,
Banani Roy,
Chanchal Roy,
Richard Bassey
Abstract:
Machine learning (ML)-based defect prediction models can improve software quality. However, their opaque reasoning creates an HCI challenge because developers struggle to trust models they cannot interpret. Explainable AI (XAI) methods such as LIME, SHAP, and BreakDown aim to provide transparency, but when used together, they often produce conflicting explanations that increase confusion, frustrat…
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Machine learning (ML)-based defect prediction models can improve software quality. However, their opaque reasoning creates an HCI challenge because developers struggle to trust models they cannot interpret. Explainable AI (XAI) methods such as LIME, SHAP, and BreakDown aim to provide transparency, but when used together, they often produce conflicting explanations that increase confusion, frustration, and cognitive load. To address this usability challenge, we introduce XMENTOR, a human-centered, rank-aware aggregation method implemented as a VS Code plugin. XMENTOR unifies multiple post-hoc explanations into a single, coherent view by applying adaptive thresholding, rank and sign agreement, and fallback strategies to preserve clarity without overwhelming users. In a user study, nearly 90% of the participants preferred aggregated explanations, citing reduced confusion and stronger support for daily tasks of debugging and review of defects. Our findings show how combining explanations and embedding them into developer workflows can enhance interpretability, usability, and trust.
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Submitted 26 March, 2026; v1 submitted 25 February, 2026;
originally announced February 2026.
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Multi-Attribute Group Fairness in $k$-NN Queries on Vector Databases
Authors:
Thinh On,
Senjuti Basu Roy,
Baruch Schieber
Abstract:
We initiate the study of multi-attribute group fairness in $k$-nearest neighbor ($k$-NN) search over vector databases. Unlike prior work that optimizes efficiency or query filtering, fairness imposes count constraints to ensure proportional representation across groups defined by protected attributes. When fairness spans multiple attributes, these constraints must be satisfied simultaneously, maki…
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We initiate the study of multi-attribute group fairness in $k$-nearest neighbor ($k$-NN) search over vector databases. Unlike prior work that optimizes efficiency or query filtering, fairness imposes count constraints to ensure proportional representation across groups defined by protected attributes. When fairness spans multiple attributes, these constraints must be satisfied simultaneously, making the problem computationally hard. To address this, we propose a computational framework that produces high-quality approximate nearest neighbors with good trade-offs between search time, memory/indexing cost, and recall. We adapt locality-sensitive hashing (LSH) to accelerate candidate generation and build a lightweight index over the Cartesian product of protected attribute values. Our framework retrieves candidates satisfying joint count constraints and then applies a post-processing stage to construct fair $k$-NN results across all attributes. For 2 attributes, we present an exact polynomial-time flow-based algorithm; for 3 or more, we formulate ILP-based exact solutions with higher computational cost. We provide theoretical guarantees, identify efficiency--fairness trade-offs, and empirically show that existing vector search methods cannot be directly adapted for fairness. Experimental evaluations demonstrate the generality of the proposed framework and scalability.
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Submitted 19 February, 2026;
originally announced February 2026.
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Expert-Data Alignment Governs Generation Quality in Decentralized Diffusion Models
Authors:
Marcos Villagra,
Bidhan Roy,
Raihan Seraj,
Zhiying Jiang
Abstract:
Decentralized Diffusion Models (DDMs) route denoising through experts trained independently on disjoint data clusters, which can strongly disagree in their predictions. What governs the quality of generations in such systems? We present the first ever systematic investigation of this question. A priori, the expectation is that minimizing denoising trajectory sensitivity -- minimizing how perturbat…
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Decentralized Diffusion Models (DDMs) route denoising through experts trained independently on disjoint data clusters, which can strongly disagree in their predictions. What governs the quality of generations in such systems? We present the first ever systematic investigation of this question. A priori, the expectation is that minimizing denoising trajectory sensitivity -- minimizing how perturbations amplify during sampling -- should govern generation quality. We demonstrate this hypothesis is incorrect: a stability-quality dissociation. Full ensemble routing, which combines all expert predictions at each step, achieves the most stable sampling dynamics and best numerical convergence while producing the worst generation quality (FID 47.9 vs. 22.6 for sparse Top-2 routing). Instead, we identify expert-data alignment as the governing principle: generation quality depends on routing inputs to experts whose training distribution covers the current denoising state. Across two distinct DDM systems, we validate expert-data alignment using (i) data-cluster distance analysis, confirming sparse routing selects experts with data clusters closest to the current denoising state, and (ii) per-expert analysis, showing selected experts produce more accurate predictions than non-selected ones, and (iii) expert disagreement analysis, showing quality degrades when experts disagree. For DDM deployment, our findings establish that routing should prioritize expert-data alignment over numerical stability metrics.
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Submitted 31 July, 2026; v1 submitted 2 February, 2026;
originally announced February 2026.
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Label Curation Using Agentic AI
Authors:
Subhodeep Ghosh,
Bayan Divaaniaazar,
Md Ishat-E-Rabban,
Spencer Clarke,
Senjuti Basu Roy
Abstract:
Data annotation is essential for supervised learning, yet producing accurate, unbiased, and scalable labels remains challenging as datasets grow in size and modality. Traditional human-centric pipelines are costly, slow, and prone to annotator variability, motivating reliability-aware automated annotation. We present AURA (Agentic AI for Unified Reliability Modeling and Annotation Aggregation), an…
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Data annotation is essential for supervised learning, yet producing accurate, unbiased, and scalable labels remains challenging as datasets grow in size and modality. Traditional human-centric pipelines are costly, slow, and prone to annotator variability, motivating reliability-aware automated annotation. We present AURA (Agentic AI for Unified Reliability Modeling and Annotation Aggregation), an agentic AI framework for large-scale, multi-modal data annotation. AURA coordinates multiple AI agents to generate and validate labels without requiring ground truth. At its core, AURA adapts a classical probabilistic model that jointly infers latent true labels and annotator reliability via confusion matrices, using Expectation-Maximization to reconcile conflicting annotations and aggregate noisy predictions. Across the four benchmark datasets evaluated, AURA achieves accuracy improvements of up to 5.8% over baseline. In more challenging settings with poor quality annotators, the improvement is up to 50% over baseline. AURA also accurately estimates the reliability of annotators, allowing assessment of annotator quality even without any pre-validation steps.
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Submitted 30 January, 2026;
originally announced February 2026.
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Why Are AI Agent Involved Pull Requests (Fix-Related) Remain Unmerged? An Empirical Study
Authors:
Khairul Alam,
Saikat Mondal,
Banani Roy
Abstract:
Autonomous coding agents (e.g., OpenAI Codex, Devin, GitHub Copilot) are increasingly used to generate fix-related pull requests (PRs) in real world software repositories. However, their practical effectiveness depends on whether these contributions are accepted and merged by project maintainers. In this paper, we present an empirical study of AI agent involved fix related PRs, examining both thei…
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Autonomous coding agents (e.g., OpenAI Codex, Devin, GitHub Copilot) are increasingly used to generate fix-related pull requests (PRs) in real world software repositories. However, their practical effectiveness depends on whether these contributions are accepted and merged by project maintainers. In this paper, we present an empirical study of AI agent involved fix related PRs, examining both their integration outcomes, latency, and the factors that hinder successful merging. We first analyze 8,106 fix related PRs authored by five widely used AI coding agents from the AIDEV POP dataset to quantify the proportions of PRs that are merged, closed without merging, or remain open. We then conduct a manual qualitative analysis of a statistically significant sample of 326 closed but unmerged PRs, spending approximately 100 person hours to construct a structured catalog of 12 failure reasons. Our results indicate that test case failures and prior resolution of the same issues by other PRs are the most common causes of non integration, whereas build or deployment failures are comparatively rare. Overall, our findings expose key limitations of current AI coding agents in real world settings and highlight directions for their further improvement and for more effective human AI collaboration in software maintenance.
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Submitted 29 January, 2026;
originally announced February 2026.
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Beyond Bug Fixes: An Empirical Investigation of Post-Merge Code Quality Issues in Agent-Generated Pull Requests
Authors:
Shamse Tasnim Cynthia,
Al Muttakin,
Banani Roy
Abstract:
The increasing adoption of AI coding agents has increased the number of agent-generated pull requests (PRs) merged with little or no human intervention. Although such PRs promise productivity gains, their post-merge code quality remains underexplored, as prior work has largely relied on benchmarks and controlled tasks rather than large-scale post-merge analyses. To address this gap, we analyze 1,2…
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The increasing adoption of AI coding agents has increased the number of agent-generated pull requests (PRs) merged with little or no human intervention. Although such PRs promise productivity gains, their post-merge code quality remains underexplored, as prior work has largely relied on benchmarks and controlled tasks rather than large-scale post-merge analyses. To address this gap, we analyze 1,210 merged agent-generated bug-fix PRs from Python repositories in the AIDev dataset. Using SonarQube, we perform a differential analysis between base and merged commits to identify code quality issues newly introduced by PR changes. We examine issue frequency, density, severity, and rule-level prevalence across five agents. Our results show that apparent differences in raw issue counts across agents largely disappear after normalizing by code churn, indicating that higher issue counts are primarily driven by larger PRs. Across all agents, code smells dominate, particularly at critical and major severities, while bugs are less frequent but often severe. Overall, our findings show that merge success does not reliably reflect post-merge code quality, highlighting the need for systematic quality checks for agent-generated bug-fix PRs.
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Submitted 27 January, 2026;
originally announced January 2026.
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Are We All Using Agents the Same Way? An Empirical Study of Core and Peripheral Developers Use of Coding Agents
Authors:
Shamse Tasnim Cynthia,
Joy Krishan Das,
Banani Roy
Abstract:
Autonomous AI agents are transforming software development and redefining how developers collaborate with AI. Prior research shows that the adoption and use of AI-powered tools differ between core and peripheral developers. However, it remains unclear how this dynamic unfolds in the emerging era of autonomous coding agents. In this paper, we present the first empirical study of 9,427 agentic PRs,…
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Autonomous AI agents are transforming software development and redefining how developers collaborate with AI. Prior research shows that the adoption and use of AI-powered tools differ between core and peripheral developers. However, it remains unclear how this dynamic unfolds in the emerging era of autonomous coding agents. In this paper, we present the first empirical study of 9,427 agentic PRs, examining how core and peripheral developers use, review, modify, and verify agent-generated contributions prior to acceptance. Through a mix of qualitative and quantitative analysis, we make four key contributions. First, a subset of peripheral developers use agents more often, delegating tasks evenly across bug fixing, feature addition, documentation, and testing. In contrast, core developers focus more on documentation and testing, yet their agentic PRs are frequently merged into the main/master branch. Second, core developers engage slightly more in review discussions than peripheral developers, and both groups focus on evolvability issues. Third, agentic PRs are less likely to be modified, but when they are, both groups commonly perform refactoring. Finally, peripheral developers are more likely to merge without running CI checks, whereas core developers more consistently require passing verification before acceptance. Our analysis offers a comprehensive view of how developer experience shapes integration offer insights for both peripheral and core developers on how to effectively collaborate with coding agents.
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Submitted 27 January, 2026;
originally announced January 2026.
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Analyzing GitHub Issues and Pull Requests in nf-core Pipelines: Insights into nf-core Pipeline Repositories
Authors:
Khairul Alam,
Banani Roy
Abstract:
Scientific Workflow Systems (SWSs) such as Nextflow have become essential software frameworks for conducting reproducible, scalable, and portable computational analyses in data-intensive fields like genomics, transcriptomics, and proteomics. Building on Nextflow, the nf-core community curates standardized, peer-reviewed pipelines that follow strict testing, documentation, and governance guidelines…
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Scientific Workflow Systems (SWSs) such as Nextflow have become essential software frameworks for conducting reproducible, scalable, and portable computational analyses in data-intensive fields like genomics, transcriptomics, and proteomics. Building on Nextflow, the nf-core community curates standardized, peer-reviewed pipelines that follow strict testing, documentation, and governance guidelines. Despite its widespread adoption, little is known about the challenges users face in developing and maintaining these pipelines. This paper presents an empirical study of 25,173 issues and pull requests from these pipelines to uncover recurring challenges, management practices, and perceived difficulties. Using BERTopic modeling, we identify 13 key challenges, including pipeline development and integration, bug fixing, integrating genomic data, managing CI configurations, and handling version updates. We then examine issue-resolution dynamics, showing that 89.38\% of issues and pull requests are eventually closed, with half resolved within 3 days. Statistical analysis reveals that the presence of labels (large effect, $\mathit{d} = 0.94$) and code snippets (medium effect, $\mathit{d} = 0.50$) significantly improves the likelihood of resolution. Further analysis reveals that tool development and repository maintenance poses the most significant challenges, followed by testing pipelines and CI configurations, and debugging containerized pipelines. Overall, this study provides actionable insights into the collaborative development and maintenance of nf-core pipelines, highlighting opportunities to enhance their usability, sustainability, and reproducibility.
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Submitted 10 February, 2026; v1 submitted 14 January, 2026;
originally announced January 2026.
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Continuous Fairness On Data Streams
Authors:
Subhodeep Ghosh,
Zhihui Du,
Angela Bonifati,
Manish Kumar,
David Bader,
Senjuti Basu Roy
Abstract:
We study the problem of enforcing continuous group fairness over windows in data streams. We propose a novel fairness model that ensures group fairness at a finer granularity level (referred to as block) within each sliding window. This formulation is particularly useful when the window size is large, making it desirable to enforce fairness at a finer granularity. Within this framework, we address…
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We study the problem of enforcing continuous group fairness over windows in data streams. We propose a novel fairness model that ensures group fairness at a finer granularity level (referred to as block) within each sliding window. This formulation is particularly useful when the window size is large, making it desirable to enforce fairness at a finer granularity. Within this framework, we address two key challenges: efficiently monitoring whether each sliding window satisfies block-level group fairness, and reordering the current window as effectively as possible when fairness is violated. To enable real-time monitoring, we design sketch-based data structures that maintain attribute distributions with minimal overhead. We also develop optimal, efficient algorithms for the reordering task, supported by rigorous theoretical guarantees. Our evaluation on four real-world streaming scenarios demonstrates the practical effectiveness of our approach. We achieve millisecond-level processing and a throughput of approximately 30,000 queries per second on average, depending on system parameters. The stream reordering algorithm improves block-level group fairness by up to 95% in certain cases, and by 50-60% on average across datasets. A qualitative study further highlights the advantages of block-level fairness compared to window-level fairness.
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Submitted 13 January, 2026;
originally announced January 2026.
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Rapid Augmentations for Time Series (RATS): A High-Performance Library for Time Series Augmentation
Authors:
Wadie Skaf,
Felix Kern,
Aryamaan Basu Roy,
Tejas Pradhan,
Roman Kalkreuth,
Holger Hoos
Abstract:
Time series augmentation is critical for training robust deep learning models, particularly in domains where labelled data is scarce and expensive to obtain. However, existing augmentation libraries for time series, mainly written in Python, suffer from performance bottlenecks, where running time grows exponentially as dataset sizes increase -- an aspect limiting their applicability in large-scale…
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Time series augmentation is critical for training robust deep learning models, particularly in domains where labelled data is scarce and expensive to obtain. However, existing augmentation libraries for time series, mainly written in Python, suffer from performance bottlenecks, where running time grows exponentially as dataset sizes increase -- an aspect limiting their applicability in large-scale, production-grade systems. We introduce RATS (Rapid Augmentations for Time Series), a high-performance library for time series augmentation written in Rust with Python bindings (RATSpy). RATS implements multiple augmentation methods spanning basic transformations, frequency-domain operations and time warping techniques, all accessible through a unified pipeline interface with built-in parallelisation. Comprehensive benchmarking of RATSpy versus a commonly used library (tasug) on 143 datasets demonstrates that RATSpy achieves an average speedup of 74.5\% over tsaug (up to 94.8\% on large datasets), with up to 47.9\% less peak memory usage.
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Submitted 6 January, 2026;
originally announced January 2026.
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Prior Diffusiveness and Regret in the Linear-Gaussian Bandit
Authors:
Yifan Zhu,
John C. Duchi,
Benjamin Van Roy
Abstract:
We prove that Thompson sampling exhibits $\tilde{O}(σd \sqrt{T} + d r \sqrt{\mathrm{Tr}(Σ_0)})$ Bayesian regret in the linear-Gaussian bandit with a $\mathcal{N}(μ_0, Σ_0)$ prior distribution on the coefficients, where $d$ is the dimension, $T$ is the time horizon, $r$ is the maximum $\ell_2$ norm of the actions, and $σ^2$ is the noise variance. In contrast to existing regret bounds, this shows th…
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We prove that Thompson sampling exhibits $\tilde{O}(σd \sqrt{T} + d r \sqrt{\mathrm{Tr}(Σ_0)})$ Bayesian regret in the linear-Gaussian bandit with a $\mathcal{N}(μ_0, Σ_0)$ prior distribution on the coefficients, where $d$ is the dimension, $T$ is the time horizon, $r$ is the maximum $\ell_2$ norm of the actions, and $σ^2$ is the noise variance. In contrast to existing regret bounds, this shows that to within logarithmic factors, the prior-dependent ``burn-in'' term $d r \sqrt{\mathrm{Tr}(Σ_0)}$ decouples additively from the minimax (long run) regret $σd \sqrt{T}$. Previous regret bounds exhibit a multiplicative dependence on these terms. We establish these results via a new ``elliptical potential'' lemma, and also provide a lower bound indicating that the burn-in term is unavoidable.
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Submitted 3 July, 2026; v1 submitted 5 January, 2026;
originally announced January 2026.
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GRIT -- Geometry-Aware PEFT with K-FACPreconditioning, Fisher-Guided Reprojection, andDynamic Rank Adaptation
Authors:
Pritish Saha,
Chandrav Rajbangshi,
Rudra Goyal,
Mohit Goyal,
Anurag Deo,
Biswajit Roy,
Ningthoujam Dhanachandra Singh,
Raxit Goswami,
Amitava Das
Abstract:
Parameter-efficient fine-tuning (PEFT) is the default way to adapt LLMs, but widely used LoRA and QLoRA are largely geometry-agnostic: they optimize in fixed, randomly oriented low-rank subspaces with first-order descent, mostly ignoring local loss curvature. This can inflate the effective update budget and amplify drift along weakly constrained directions. We introduce GRIT, a dynamic, curvature-…
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Parameter-efficient fine-tuning (PEFT) is the default way to adapt LLMs, but widely used LoRA and QLoRA are largely geometry-agnostic: they optimize in fixed, randomly oriented low-rank subspaces with first-order descent, mostly ignoring local loss curvature. This can inflate the effective update budget and amplify drift along weakly constrained directions. We introduce GRIT, a dynamic, curvature-aware LoRA procedure that preserves the LoRA parameterization but: (1) preconditions gradients in rank space using K-FAC as a natural-gradient proxy; (2) periodically reprojects the low-rank basis onto dominant Fisher eigendirections to suppress drift; and (3) adapts the effective rank from the spectrum so capacity concentrates where signal resides. Across instruction-following, comprehension, and reasoning benchmarks on LLaMA backbones, GRIT matches or surpasses LoRA and QLoRA while reducing trainable parameters by 46% on average (25--80% across tasks), without practical quality loss across prompt styles and data mixes. To model forgetting, we fit a curvature-modulated power law. Empirically, GRIT yields lower drift and a better updates-vs-retention frontier than strong PEFT-optimizer baselines (Orthogonal-LoRA, IA3, DoRA, Eff-FT, Shampoo).
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Submitted 1 January, 2026;
originally announced January 2026.
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What Drives Issue Resolution Speed? An Empirical Study of Scientific Workflow Systems on GitHub
Authors:
Khairul Alam,
Banani Roy
Abstract:
Scientific Workflow Systems (SWSs) play a vital role in enabling reproducible, scalable, and automated scientific analysis. Like other open-source software, these systems depend on active maintenance and community engagement to remain reliable and sustainable. However, despite the importance of timely issue resolution for software quality and community trust, little is known about what drives issu…
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Scientific Workflow Systems (SWSs) play a vital role in enabling reproducible, scalable, and automated scientific analysis. Like other open-source software, these systems depend on active maintenance and community engagement to remain reliable and sustainable. However, despite the importance of timely issue resolution for software quality and community trust, little is known about what drives issue resolution speed within SWSs. This paper presents an empirical study of issue management and resolution across a collection of GitHub-hosted SWS projects. We analyze 21,116 issues to investigate how project characteristics, issue metadata, and contributor interactions affect time-to-close. Specifically, we address two research questions: (1) how issues are managed and addressed in SWSs, and (2) how issue and contributor features relate to issue resolution speed. We find that 68.91% of issues are closed, with half of them resolved within 18.09 days. Our results show that although SWS projects follow structured issue management practices, the issue resolution speed varies considerably across systems. Factors such as labeling and assigning issues are associated with faster issue resolution. Based on our findings, we make recommendations for developers to better manage SWS repository issues and improve their quality.
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Submitted 16 January, 2026; v1 submitted 21 December, 2025;
originally announced December 2025.
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See It Before You Grab It: Deep Learning-based Action Anticipation in Basketball
Authors:
Arnau Barrera Roy,
Albert Clapés Sintes
Abstract:
Computer vision and video understanding have transformed sports analytics by enabling large-scale, automated analysis of game dynamics from broadcast footage. Despite significant advances in player and ball tracking, pose estimation, action localization, and automatic foul recognition, anticipating actions before they occur in sports videos has received comparatively little attention. This work in…
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Computer vision and video understanding have transformed sports analytics by enabling large-scale, automated analysis of game dynamics from broadcast footage. Despite significant advances in player and ball tracking, pose estimation, action localization, and automatic foul recognition, anticipating actions before they occur in sports videos has received comparatively little attention. This work introduces the task of action anticipation in basketball broadcast videos, focusing on predicting which team will gain possession of the ball following a shot attempt. To benchmark this task, a new self-curated dataset comprising 100,000 basketball video clips, over 300 hours of footage, and more than 2,000 manually annotated rebound events is presented. Comprehensive baseline results are reported using state-of-the-art action anticipation methods, representing the first application of deep learning techniques to basketball rebound prediction. Additionally, two complementary tasks, rebound classification and rebound spotting, are explored, demonstrating that this dataset supports a wide range of video understanding applications in basketball, for which no comparable datasets currently exist. Experimental results highlight both the feasibility and inherent challenges of anticipating rebounds, providing valuable insights into predictive modeling for dynamic multi-agent sports scenarios. By forecasting team possession before rebounds occur, this work enables applications in real-time automated broadcasting and post-game analysis tools to support decision-making.
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Submitted 17 December, 2025;
originally announced December 2025.
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FunPhase: A Periodic Functional Autoencoder for Motion Generation via Phase Manifolds
Authors:
Marco Pegoraro,
Evan Atherton,
Bruno Roy,
Aliasghar Khani,
Arianna Rampini
Abstract:
Learning natural body motion remains challenging due to the strong coupling between spatial geometry and temporal dynamics. Embedding motion in phase manifolds, latent spaces that capture local periodicity, has proven effective for motion prediction; however, existing approaches are tied to fixed skeletons and narrow motion distributions, limiting their applicability across diverse settings. We in…
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Learning natural body motion remains challenging due to the strong coupling between spatial geometry and temporal dynamics. Embedding motion in phase manifolds, latent spaces that capture local periodicity, has proven effective for motion prediction; however, existing approaches are tied to fixed skeletons and narrow motion distributions, limiting their applicability across diverse settings. We introduce FunPhase, a functional periodic autoencoder that learns a phase manifold for motion and replaces discrete temporal decoding with a function-space formulation, enabling smooth trajectories that can be sampled at arbitrary temporal resolutions. FunPhase unifies motion prediction and generation within a single interpretable phase manifold, enabling motion generation via latent diffusion, generalizes across skeletons and datasets, and supports downstream tasks such as motion super-resolution and partial-body completion. Our model achieves substantially lower reconstruction error than prior periodic autoencoder baselines, achieving uniform improvements of at least $45\%$ across all metrics, while enabling a broader range of applications and performing on par with state-of-the-art motion generation methods.
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Submitted 3 July, 2026; v1 submitted 10 December, 2025;
originally announced December 2025.
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DAE-HardNet: A Physics Constrained Neural Network Enforcing Differential-Algebraic Hard Constraints
Authors:
Rahul Golder,
Bimol Nath Roy,
M. M. Faruque Hasan
Abstract:
Traditional physics-informed neural networks (PINNs) do not always satisfy physics based constraints, especially when the constraints include differential operators. Rather, they minimize the constraint violations in a soft way. Strict satisfaction of differential-algebraic equations (DAEs) to embed domain knowledge and first-principles in data-driven models is generally challenging. This is becau…
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Traditional physics-informed neural networks (PINNs) do not always satisfy physics based constraints, especially when the constraints include differential operators. Rather, they minimize the constraint violations in a soft way. Strict satisfaction of differential-algebraic equations (DAEs) to embed domain knowledge and first-principles in data-driven models is generally challenging. This is because data-driven models consider the original functions to be black-box whose derivatives can only be obtained after evaluating the functions. We introduce DAE-HardNet, a physics-constrained (rather than simply physics-informed) neural network that learns both the functions and their derivatives simultaneously, while enforcing algebraic as well as differential constraints. This is done by projecting model predictions onto the constraint manifold using a differentiable projection layer. We apply DAE-HardNet to several systems and test problems governed by DAEs, including the dynamic Lotka-Volterra predator-prey system and transient heat conduction. We also show the ability of DAE-HardNet to estimate unknown parameters through a parameter estimation problem. Compared to multilayer perceptrons (MLPs) and PINNs, DAE-HardNet achieves orders of magnitude reduction in the physics loss while maintaining the prediction accuracy. It has the added benefits of learning the derivatives which improves the constrained learning of the backbone neural network prior to the projection layer. For specific problems, this suggests that the projection layer can be bypassed for faster inference. The current implementation and codes are available at https://github.com/SOULS-TAMU/DAE-HardNet.
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Submitted 5 December, 2025;
originally announced December 2025.
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Revisiting Logic Encryption
Authors:
Rupesh Raj Karn,
Lakshmi Likhitha Mankali,
Zeng Wang,
Saideep Sreekumar,
Prithwish Basu Roy,
Ozgur Sinanoglu,
Lilas Alrahis,
Johann Knechtel
Abstract:
Modern circuits face various threats like reverse engineering, theft of intellectual property (IP), side-channel attacks, etc. Here, we present a novel approach for IP protection based on logic encryption (LE). Unlike established schemes for logic locking, our work obfuscates the circuit's structure and functionality by encoding and encrypting the logic itself. We devise an end-to-end method for p…
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Modern circuits face various threats like reverse engineering, theft of intellectual property (IP), side-channel attacks, etc. Here, we present a novel approach for IP protection based on logic encryption (LE). Unlike established schemes for logic locking, our work obfuscates the circuit's structure and functionality by encoding and encrypting the logic itself. We devise an end-to-end method for practical LE implementation based on standard cryptographic algorithms, key-bit randomization, simple circuit design techniques, and system-level synthesis operations, all in a correct-by-construction manner. Our extensive analysis demonstrates the remarkable efficacy of our scheme, outperforming prior art against a range of oracle-less attacks covering crucial threat vectors, all with lower design overheads. We provide a full open-source release.
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Submitted 21 August, 2026; v1 submitted 30 November, 2025;
originally announced December 2025.
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LockForge: Automating Paper-to-Code for Logic Locking with Multi-Agent Reasoning LLMs
Authors:
Akashdeep Saha,
Zeng Wang,
Prithwish Basu Roy,
Johann Knechtel,
Ozgur Sinanoglu,
Ramesh Karri
Abstract:
Despite rapid progress in logic locking (LL), reproducibility remains a challenge as codes are rarely made public. We present LockForge, a first-of-its-kind, multi-agent large language model (LLM) framework that turns LL descriptions in papers into executable and tested code. LockForge provides a carefully crafted pipeline realizing forethought, implementation, iterative refinement, and a multi-st…
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Despite rapid progress in logic locking (LL), reproducibility remains a challenge as codes are rarely made public. We present LockForge, a first-of-its-kind, multi-agent large language model (LLM) framework that turns LL descriptions in papers into executable and tested code. LockForge provides a carefully crafted pipeline realizing forethought, implementation, iterative refinement, and a multi-stage validation, all to systematically bridge the gap between prose and practice for complex LL schemes. For validation, we devise (i) an LLM-as-Judge stage with a scoring system considering behavioral checks, conceptual mechanisms, structural elements, and reproducibility on benchmarks, and (ii) an independent LLM-as-Examiner stage for ground-truth assessment. We apply LockForge to 10 seminal LL schemes, many of which lack reference implementations. Our evaluation on multiple SOTA LLMs, including ablation studies, reveals the significant complexity of the task. We show that an advanced reasoning model and a sophisticated, multi-stage framework like LockForge are required. We release all implementations and benchmarks, providing a reproducible and fair foundation for evaluation of further LL research.
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Submitted 28 November, 2025; v1 submitted 23 November, 2025;
originally announced November 2025.
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Establishing Traceability Links between Release Notes & Software Artifacts: Practitioners' Perspectives
Authors:
Sristy Sumana Nath,
Banani Roy,
Munima Jahan
Abstract:
Maintaining traceability links between software release notes and corresponding development artifacts, e.g., pull requests (PRs), commits, and issues, is essential for managing technical debt and ensuring maintainability. However, in open-source environments where contributors work remotely and asynchronously, establishing and maintaining these links is often error-prone, time-consuming, and frequ…
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Maintaining traceability links between software release notes and corresponding development artifacts, e.g., pull requests (PRs), commits, and issues, is essential for managing technical debt and ensuring maintainability. However, in open-source environments where contributors work remotely and asynchronously, establishing and maintaining these links is often error-prone, time-consuming, and frequently overlooked. Our empirical study of GitHub repositories revealed that 47% of release artifacts lacked traceability links, and 12% contained broken links. To address this gap, we first analyzed release notes to identify their What, Why, and How information and assessed how these align with PRs, commits, and issues. We curated a benchmark dataset consisting of 3,500 filtered and validated traceability link instances. Then, we implemented LLM-based approaches to automatically establish traceability links of three pairs between release note contents & PRs, release note contents & PRs and release note contents & issues. By combining the time proximity feature, the LLM-based approach, e.g., Gemini 1.5 Pro, achieved a high Precision@1 value of 0.73 for PR traceability recovery. To evaluate the usability and adoption potential of this approach, we conducted an online survey involving 33 open-source practitioners. 16% of respondents rated as very important, and 68% as somewhat important for traceability maintenance.
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Submitted 22 November, 2025;
originally announced November 2025.
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Towards LLM-Powered Task-Aware Retrieval of Scientific Workflows for Galaxy
Authors:
Shamse Tasnim Cynthia,
Banani Roy
Abstract:
Scientific Workflow Management Systems (SWfMSs) such as Galaxy have become essential infrastructure in bioinformatics, supporting the design, execution, and sharing of complex multi-step analyses. Despite hosting hundreds of reusable workflows across domains, Galaxy's current keyword-based retrieval system offers limited support for semantic query interpretation and often fails to surface relevant…
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Scientific Workflow Management Systems (SWfMSs) such as Galaxy have become essential infrastructure in bioinformatics, supporting the design, execution, and sharing of complex multi-step analyses. Despite hosting hundreds of reusable workflows across domains, Galaxy's current keyword-based retrieval system offers limited support for semantic query interpretation and often fails to surface relevant workflows when exact term matches are absent. To address this gap, we propose a task-aware, two-stage retrieval framework that integrates dense vector search with large language model (LLM)-based reranking. Our system first retrieves candidate workflows using state-of-the-art embedding models and then reranks them using instruction-tuned generative LLMs (GPT-4o, Mistral-7B) based on semantic task alignment. To support robust evaluation, we construct a benchmark dataset of Galaxy workflows annotated with semantic topics via BERTopic and synthesize realistic task-oriented queries using LLMs. We conduct a comprehensive comparison of lexical, dense, and reranking models using standard IR metrics, presenting the first systematic evaluation of retrieval performance in the Galaxy ecosystem. Results show that our approach significantly improves top-k accuracy and relevance, particularly for long or under-specified queries. We further integrate our system as a prototype tool within Galaxy, providing a proof-of-concept for LLM-enhanced workflow search. This work advances the usability and accessibility of scientific workflows, especially for novice users and interdisciplinary researchers.
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Submitted 3 November, 2025;
originally announced November 2025.
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Aegis: A Correlation-Based Data Masking Advisor for Data Sharing Ecosystems
Authors:
Omar Islam Laskar,
Fatemeh Ramezani Khozestani,
Ishika Nankani,
Sohrab Namazi Nia,
Senjuti Basu Roy,
Kaustubh Beedkar
Abstract:
Data sharing ecosystems connect providers, consumers, and intermediaries to facilitate the exchange and use of data for a wide range of downstream tasks. In sensitive domains such as healthcare, privacy is enforced as a hard constraint, any shared data must satisfy a minimum privacy threshold. However, among all masking configurations that meet this requirement, the utility of the masked data can…
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Data sharing ecosystems connect providers, consumers, and intermediaries to facilitate the exchange and use of data for a wide range of downstream tasks. In sensitive domains such as healthcare, privacy is enforced as a hard constraint, any shared data must satisfy a minimum privacy threshold. However, among all masking configurations that meet this requirement, the utility of the masked data can vary significantly, posing a key challenge: how to efficiently select the optimal configuration that preserves maximum utility. This paper presents Aegis, a middleware framework that selects optimal masking configurations for machine learning datasets with features and class labels. Aegis incorporates a utility optimizer that minimizes predictive utility deviation, quantifying shifts in feature label correlations due to masking. Our framework leverages limited data summaries (such as 1D histograms) or none to estimate the feature label joint distribution, making it suitable for scenarios where raw data is inaccessible due to privacy restrictions. To achieve this, we propose a joint distribution estimator based on iterative proportional fitting, which allows supporting various feature label correlation quantification methods such as mutual information, chi square, or g3. Our experimental evaluation of real world datasets shows that Aegis identifies optimal masking configurations over an order of magnitude faster, while the resulting masked datasets achieve predictive performance on downstream ML tasks on par with baseline approaches and complements privacy anonymization data masking techniques.
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Submitted 4 November, 2025; v1 submitted 12 October, 2025;
originally announced October 2025.
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Paris: A Decentralized Trained Open-Weight Diffusion Model
Authors:
Zhiying Jiang,
Raihan Seraj,
Marcos Villagra,
Bidhan Roy
Abstract:
We present Paris, the first publicly released diffusion model pre-trained entirely through decentralized computation. Paris demonstrates that high-quality text-to-image generation can be achieved without centrally coordinated infrastructure. Paris is open for research and commercial use. Paris required implementing our Distributed Diffusion Training framework from scratch. The model consists of 8…
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We present Paris, the first publicly released diffusion model pre-trained entirely through decentralized computation. Paris demonstrates that high-quality text-to-image generation can be achieved without centrally coordinated infrastructure. Paris is open for research and commercial use. Paris required implementing our Distributed Diffusion Training framework from scratch. The model consists of 8 expert diffusion models (129M-605M parameters each) trained in complete isolation with no gradient, parameter, or intermediate activation synchronization. Rather than requiring synchronized gradient updates across thousands of GPUs, we partition data into semantically coherent clusters where each expert independently optimizes its subset while collectively approximating the full distribution. A lightweight transformer router dynamically selects appropriate experts at inference, achieving generation quality comparable to centrally coordinated baselines. Eliminating synchronization enables training on heterogeneous hardware without specialized interconnects. Empirical validation confirms that Paris's decentralized training maintains generation quality while removing the dedicated GPU cluster requirement for large-scale diffusion models. Paris achieves this using 14$\times$ less training data and 16$\times$ less compute than the prior decentralized baseline.
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Submitted 31 July, 2026; v1 submitted 3 October, 2025;
originally announced October 2025.
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ThirstyFLOPS: Water Footprint Modeling and Analysis Toward Sustainable HPC Systems
Authors:
Yankai Jiang,
Raghavendra Kanakagiri,
Rohan Basu Roy,
Devesh Tiwari
Abstract:
High-performance computing (HPC) systems are becoming increasingly water-intensive due to their reliance on water-based cooling and the energy used in power generation. However, the water footprint of HPC remains relatively underexplored-especially in contrast to the growing focus on carbon emissions. In this paper, we present ThirstyFLOPS - a comprehensive water footprint analysis framework for H…
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High-performance computing (HPC) systems are becoming increasingly water-intensive due to their reliance on water-based cooling and the energy used in power generation. However, the water footprint of HPC remains relatively underexplored-especially in contrast to the growing focus on carbon emissions. In this paper, we present ThirstyFLOPS - a comprehensive water footprint analysis framework for HPC systems. Our approach incorporates region-specific metrics, including Water Usage Effectiveness, Power Usage Effectiveness, and Energy Water Factor, to quantify water consumption using real-world data. Using four representative HPC systems - Marconi, Fugaku, Polaris, and Frontier - as examples, we provide implications for HPC system planning and management. We explore the impact of regional water scarcity and nuclear-based energy strategies on HPC sustainability. Our findings aim to advance the development of water-aware, environmentally responsible computing infrastructures.
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Submitted 30 September, 2025;
originally announced October 2025.
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Are Classical Clone Detectors Good Enough For the AI Era?
Authors:
Ajmain Inqiad Alam,
Palash Roy,
Farouq Al-omari,
Chanchal Roy,
Banani Roy,
Kevin Schneider
Abstract:
The increasing adoption of AI-generated code has reshaped modern software development, introducing syntactic and semantic variations in cloned code. Unlike traditional human-written clones, AI-generated clones exhibit systematic syntactic patterns and semantic differences learned from large-scale training data. This shift presents new challenges for classical code clone detection (CCD) tools, whic…
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The increasing adoption of AI-generated code has reshaped modern software development, introducing syntactic and semantic variations in cloned code. Unlike traditional human-written clones, AI-generated clones exhibit systematic syntactic patterns and semantic differences learned from large-scale training data. This shift presents new challenges for classical code clone detection (CCD) tools, which have historically been validated primarily on human-authored codebases and optimized to detect syntactic (Type 1-3) and limited semantic clones. Given that AI-generated code can produce both syntactic and complex semantic clones, it is essential to evaluate the effectiveness of classical CCD tools within this new paradigm. In this paper, we systematically evaluate nine widely used CCD tools using GPTCloneBench, a benchmark containing GPT-3-generated clones. To contextualize and validate our results, we further test these detectors on established human-authored benchmarks, BigCloneBench and SemanticCloneBench, to measure differences in performance between traditional and AI-generated clones. Our analysis demonstrates that classical CCD tools, particularly those enhanced by effective normalization techniques, retain considerable effectiveness against AI-generated clones, while some exhibit notable performance variation compared to traditional benchmarks. This paper contributes by (1) evaluating classical CCD tools against AI-generated clones, providing critical insights into their current strengths and limitations; (2) highlighting the role of normalization techniques in improving detection accuracy; and (3) delivering detailed scalability and execution-time analyses to support practical CCD tool selection.
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Submitted 30 September, 2025;
originally announced September 2025.
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Unsupervised Representation Learning for 3D Mesh Parameterization with Semantic and Visibility Objectives
Authors:
AmirHossein Zamani,
Bruno Roy,
Arianna Rampini
Abstract:
Recent 3D generative models produce high-quality textures for 3D mesh objects. However, they commonly rely on the heavy assumption that input 3D meshes are accompanied by manual mesh parameterization (UV mapping), a manual task that requires both technical precision and artistic judgment. Industry surveys show that this process often accounts for a significant share of asset creation, creating a m…
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Recent 3D generative models produce high-quality textures for 3D mesh objects. However, they commonly rely on the heavy assumption that input 3D meshes are accompanied by manual mesh parameterization (UV mapping), a manual task that requires both technical precision and artistic judgment. Industry surveys show that this process often accounts for a significant share of asset creation, creating a major bottleneck for 3D content creators. Moreover, existing automatic methods often ignore two perceptually important criteria: (1) semantic awareness (UV charts should align semantically similar 3D parts across shapes) and (2) visibility awareness (cutting seams should lie in regions unlikely to be seen). To overcome these shortcomings and to automate the mesh parameterization process, we present an unsupervised differentiable framework that augments standard geometry-preserving UV learning with semantic- and visibility-aware objectives. For semantic-awareness, our pipeline (i) segments the mesh into semantic 3D parts, (ii) applies an unsupervised learned per-part UV-parameterization backbone, and (iii) aggregates per-part charts into a unified UV atlas. For visibility-awareness, we use ambient occlusion (AO) as an exposure proxy and back-propagate a soft differentiable AO-weighted seam objective to steer cutting seams toward occluded regions. By conducting qualitative and quantitative evaluations against state-of-the-art methods, we show that the proposed method produces UV atlases that better support texture generation and reduce perceptible seam artifacts compared to recent baselines. Our implementation code is publicly available at: https://github.com/AHHHZ975/Semantic-Visibility-UV-Param.
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Submitted 27 February, 2026; v1 submitted 29 September, 2025;
originally announced September 2025.
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DarwinGame: Playing Tournaments for Tuning Applications in Noisy Cloud Environments
Authors:
Rohan Basu Roy,
Vijay Gadepally,
Devesh Tiwari
Abstract:
This work introduces a new subarea of performance tuning -- performance tuning in a shared interference-prone computing environment. We demonstrate that existing tuners are significantly suboptimal by design because of their inability to account for interference during tuning. Our solution, DarwinGame, employs a tournament-based design to systematically compare application executions with differen…
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This work introduces a new subarea of performance tuning -- performance tuning in a shared interference-prone computing environment. We demonstrate that existing tuners are significantly suboptimal by design because of their inability to account for interference during tuning. Our solution, DarwinGame, employs a tournament-based design to systematically compare application executions with different tunable parameter configurations, enabling it to identify the relative performance of different tunable parameter configurations in a noisy environment. Compared to existing solutions, DarwinGame achieves more than 27% reduction in execution time, with less than 0.5% performance variability. DarwinGame is the first performance tuner that will help developers tune their applications in shared, interference-prone, cloud environments.
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Submitted 29 September, 2025;
originally announced September 2025.
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Computational Analysis of Conversation Dynamics through Participant Responsivity
Authors:
Margaret Hughes,
Brandon Roy,
Elinor Poole-Dayan,
Deb Roy,
Jad Kabbara
Abstract:
Growing literature explores toxicity and polarization in discourse, with comparatively less work on characterizing what makes dialogue prosocial and constructive. We explore conversational discourse and investigate a method for characterizing its quality built upon the notion of ``responsivity'' -- whether one person's conversational turn is responding to a preceding turn. We develop and evaluate…
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Growing literature explores toxicity and polarization in discourse, with comparatively less work on characterizing what makes dialogue prosocial and constructive. We explore conversational discourse and investigate a method for characterizing its quality built upon the notion of ``responsivity'' -- whether one person's conversational turn is responding to a preceding turn. We develop and evaluate methods for quantifying responsivity -- first through semantic similarity of speaker turns, and second by leveraging state-of-the-art large language models (LLMs) to identify the relation between two speaker turns. We evaluate both methods against a ground truth set of human-annotated conversations. Furthermore, selecting the better performing LLM-based approach, we characterize the nature of the response -- whether it responded to that preceding turn in a substantive way or not.
We view these responsivity links as a fundamental aspect of dialogue but note that conversations can exhibit significantly different responsivity structures. Accordingly, we then develop conversation-level derived metrics to address various aspects of conversational discourse. We use these derived metrics to explore other conversations and show that they support meaningful characterizations and differentiations across a diverse collection of conversations.
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Submitted 19 September, 2025;
originally announced September 2025.