Stars
COsine SImilarity-based Genotyper using pangenomes
A syntax-highlighting pager for git, diff, grep, rg --json, and blame output
Immuological gene typing and annotation for genome assembly
MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
CHMM History-Inference ML Procedure - Infers population size histories from genomic data
Economic Genome Assembly from Low Coverage Illumina and Nanopore Data
Lecture Notes on Computational and Mathematical Population Genetics
Maximum a posteriori estimate of contamination for ancient samples
command-line tools for the management of genotype likelihoods and allele counts
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
Standalone C library for assembling Illumina short reads in small regions
List of single-file C/C++ libraries, with emphasis on clause-less licenses.
Minimal and clean examples of machine learning algorithms implementations
fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
An efficient basecaller for Illumina sequencers with calibrated quality scores
Programs to analyse NGS data for population genetics purposes
Segtor: Rapid Annotation of Genomic Coordinates and Single Nucleotide Variations Using Segment 3332 Trees.