Tags: ICB-DCM/pyPESTO
Tags
Release 0.5.8
- Optimization
- Unified interface for x0 parameter (#1654)
- Unified interface for maxiter and maxeval parameters (#1648)
- Unified interface for time limits across optimizers (#1638)
- Make DlibOptimizer solver_epsilon configurable (#1637)
- Verbosity for CMA optimizer, producing no more outputfiles per default (#1656)
- Fix startpoint selection and neval in scatter search (#1644)
- Visualize
- Fix waterfall axis bug (#1640)
- Ensemble
- Fix Plotting uf UMAP and PCA (#1628)
- Store
- Updated HDF5 loading (#1636)
- Sampling
- Add support for sampling parameter values from prior distributions (#1622)
- Documentation
- Reintroduce pymc to documentation (#1643)
Release v0.5.7
- General
- Require Python >=3.11 (#1585)
- Documentation
- Updated references and citations (#1601, #1609, #1612)
- Various minor Documentation and Example fixes
- Optimization
- update scipy interface (#1588)
- Ensemble
- accurate cutoff based on chi2 distribution (#1566)
- History
- Add monotonic_history from mutliple histories (#1632)
- Profiling
- split ProfilerTask into descending and ascending parts (#1598)
- Profiles nested CIs (#1584)
- Visualize
- Fix IndexError in waterfall for all-non-finite values (#1600)
- prettier intervals for profiles by using capstyle (#1607)
- Improve waterfall plot efficiency (#1608)
- remove unnecessary title and axes labels (#1589)
- Nicer pypesto.visualize.profile_cis interval markers (#1626)
- Allow to define colors more flexibly (#1627)
- Prevent invisible plot due to large cluster number in waterfall plot (#1631)
- Objective
- Updated roadrunner steady state computation (#1604)
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