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Thesis-Supplementary-Data Public
The repository contains the supplementary tables associated with my PhD thesis.
UpdatedJun 9, 2026 -
NANOTAXI Public
An End-to-End GUI for real-time taxon identification via barcoded nanopore amplicon sequencing data. The pipeline is built using R Shiny library and majorly targets users with minimal coding backgr…
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ANOMALY Public
Snakemake workflow for calling NUMTs from Long read sequencing data. The pipeline takes either FASTQ or BAM file and outputs a text file containing NUMTs.
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Rust Public
Forked from TheAlgorithms/RustAll Algorithms implemented in Rust
Rust MIT License UpdatedFeb 5, 2026 -
MetaSutra Public
This pipeline takes the raw metagenomic WGS reads as an input, assemble them, separate the contigs in MAGs, taxonomically classify the MAGs and quantify the ARGs in the MAGs. The pipeline is built …
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This repository contains the Annotation Database for Candida auris B11220 and the steps to build the database locally.
1 UpdatedNov 6, 2024 -
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TAR-scRNA-seq Public
Forked from fw262/TAR-scRNA-seqscRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data
R GNU General Public License v3.0 UpdatedFeb 24, 2024 -
Python Public
Forked from TheAlgorithms/PythonAll Algorithms implemented in Python
Python MIT License UpdatedAug 12, 2023 -
Icarust Public
Forked from LooseLab/IcarustA fully featured MinKNOW simulator for testing read until experiments.
Rust Mozilla Public License 2.0 UpdatedMay 23, 2023 -
This repository contains the codes and additional data utilized in the benchmark study of short read based mitochondrial assemblers for human datasets
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MToolBox Public
Forked from mitoNGS/MToolBoxA bioinformatics pipeline to analyze mtDNA from NGS data
Python GNU General Public License v3.0 UpdatedOct 12, 2022 -
DrosEU_pipeline Public
Forked from capoony/DrosEU_pipelineBioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.
Python Apache License 2.0 UpdatedJul 15, 2022 -
training-collection Public
Forked from sib-swiss/training-collectionCollection of bioinformatics training materials
Other UpdatedApr 1, 2022 -
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awesome-nanopore Public
Forked from GoekeLab/awesome-nanoporeA curated list of awesome nanopore analysis tools.
MIT License UpdatedNov 10, 2021 -
old_markravinet.github.io Public
Forked from markravinet/old_markravinet.github.ioGithub website
HTML UpdatedNov 5, 2021 -
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Human-Genome_assembly_Project Public
Forked from Rohit-Satyam/Human-Genome_assembly_ProjectPython UpdatedMar 10, 2021 -
STARTapp Public
Forked from jminnier/STARTappThe START App: R Shiny Transcriptome Analysis Resource Tool
HTML GNU General Public License v3.0 UpdatedNov 11, 2020 -
bio-playground Public
Forked from brentp/bio-playgroundmiscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
C MIT License UpdatedNov 26, 2018 -
TIDAL Public
Forked from laulabbrandeis/TIDALTransposon Insertion and Depletion AnaLyzer
C UpdatedSep 13, 2017
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