add insert samtools insert size line graph#3492
Open
chelauk wants to merge 1 commit intoMultiQC:mainfrom
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This PR adds an Insert size distribution section to the Samtools module by parsing
ISrecords fromsamtools statsoutput (multiqc/modules/samtools/stats.py) and rendering them as a line plot (samtools_insert_size).Reason: I routinely use nf-core/sarek for whole genome sequence analysis. Insert-size shape is important QC signal, and viewing it directly in the MultiQC output makes library-size anomalies easier to detect without manually inspecting raw
samtools statsfiles.--strictflag)self.add_section)