cell-design

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opencobra / cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

python flux bioinformatics modeling systems-biology computational-biology biochemistry metabolism cobra metabolic-models sbml metabolic-network cell-design strain-engineering sbml-model sbml-simulation

Updated Apr 8, 2026
Python

Melclic / BioPathOpt

Star

This project provides a simulation framework for synthetic biology and metabolic engineering, with a focus on the analysis of metabolic models for the production of novel compounds.

python flux gem bioinformatics modeling systems-biology cobra sbml cell-design strain-engineering sbml-model enzyme-constraints fseof

Updated Dec 4, 2025
Jupyter Notebook

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