epidemic-modelling

Here are 12 public repositories matching this topic...

epiverse-trace / epidemics

A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

r rcpp epidemiology r-package decision-support vaccination scenario-analysis model-library epidemic-simulations rcppeigen non-pharmaceutical-interventions epidemic-modelling epiverse infectious-disease-dynamics

Updated Jan 1, 2026
R

epiverse-trace / finalsize

Star

R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

r rcpp epidemiology r-package epidemic-modelling sdg-3 epiverse outbreak-analysis

Updated Mar 26, 2026
R

epiverse-trace / cfr

Star

R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

r epidemiology r-package health-outcomes case-fatality-rate epidemic-modelling sdg-3 epiverse outbreak-analysis

Updated Jan 1, 2026
R

epiverse-trace / epichains

Star

Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

epidemiology r-package r-stats epidemic-simulations branching-processes epidemic-modelling transmission-chain-reconstruction transmission-chain epidemiology-models outbreak-simulator epidemic-dynamics

Updated Mar 30, 2026
R

epiforecasts / bpmodels

Star

[RETIRED. Use the epichains package instead]. Methods for simulating and analysing the sizes and lengths of chains from branching process models

r epidemiology r-package branching-process epidemic-simulations epidemic-modelling transmission-chain-reconstruction transmission-chain outbreak-simulator epidemic-dynamics epiverse

Updated Feb 5, 2025
R

epiverse-trace / tutorials

Star

rstats pre-alpha english-language epidemic-modelling carpentries-workbench outbreak-analysis

Updated Apr 14, 2026
R

evertrustJ / EpiVis

Star

Epidemic visualization; Language: R.

r epidemic-data epidemic-modelling

Updated Aug 17, 2020
R

americocunhajr / D-FENSE

Star

D-FENSE project deals with Dengue Virus (DENV) epidemics in Brazil, enabling predictive modeling and data visualization to support decision-making in public health.

epidemiology dengue-fever sprint time-series-forecasting epidemiological-predictions epidemic-modelling epidemiological-models data-driven-modeling dengue-modeling mosqlimate-s-modeling-sprint-2024-25

Updated Feb 10, 2026
R

ssi-dk / aedseo

Star

Automated and Early Detection of Seasonal Epidemic Onset and Burden Levels

surveillance-systems onset-detection burden-of-disease epidemic-model epidemic-modelling

Updated Jan 29, 2026
R

bryce-carson / ehpi

Star

A Basic Compartmental Epidemic Modelling API

epidemiology compartmental-model epidemic-modelling

Updated Jun 28, 2024
R

epiverse-trace / scenarios

Star

[SUSPENDED]: R package to compare epidemic scenario model outcomes.

r epidemiology r-package epidemic-modelling epiverse

Updated Feb 19, 2024
R

shussin245 / Epidemic-Modeling

Star

Created an R Shiny App is an interactive tool that simulates disease spread using SI, SIS, and SIR models, allowing users to explore how transmission and recovery rates impact epidemics over time.

shiny-apps epidemic-modelling

Updated Jan 30, 2025
R

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epidemic-modelling

Here are 12 public repositories matching this topic...

epiverse-trace / epidemics

epiverse-trace / finalsize

epiverse-trace / cfr

epiverse-trace / epichains

epiforecasts / bpmodels

epiverse-trace / tutorials

evertrustJ / EpiVis

americocunhajr / D-FENSE

ssi-dk / aedseo

bryce-carson / ehpi

epiverse-trace / scenarios

shussin245 / Epidemic-Modeling

Improve this page

Add this topic to your repo