Rapid-CNS2 Nextflow analysis pipeline
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Sep 3, 2025 - Nextflow
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molecular-diagnostics
Here are 8 public repositories matching this topic...
Public demo of MammaScope, a Streamlit-based tool for comparing immunohistochemistry (IHC) and MammaTyper molecular subtyping in breast cancer.
python bioinformatics ihc breast-cancer clinical-data streamlit immunohistochemistry molecular-diagnostics medical-software molecular-subtype concordance-analysis mammascope mammatyper health-engineering
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Apr 11, 2026 - Python
An integrated computational pipeline for CRISPR-Cas13a (SHERLOCK) malaria diagnostics and trans-kingdom neuro-immune mapping, linking PfK13-driven pathogen detection to microglial homeostatic (CX3CR1/Iba1) set-points and Gut-Brain Axis (GBA) dysregulation.
bioinformatics reproducible-research rstats neuroimmunology plasmodium-falciparum molecular-diagnostics systems-immunology gut-brain-axis crispr-cas13a pfk13-genotyping microglia-activation
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Apr 5, 2026 - R
Species-specific primer design tool: NCBI retrieval → BLAST mismatch analysis → Primer3 design → Primer-BLAST validation. Desktop GUI (PySide6) + PDF/DOCX reports.
python bioinformatics blast pcr ncbi primer-design primer3 molecular-diagnostics pyside6 species-specific
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Apr 14, 2026 - Python
Python script for qPCR analytic validation using Cq values of standard dilutions and technical replicates.
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Sep 29, 2025 - Python
A tool that parses VKGL variant classification data from public releases, connects variants across time and provides insights by visualizing different aspects.
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Jan 15, 2026 - Java
Optimal AlphaMissense threshold based on VKGL variant classifications
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Feb 7, 2024 - R
Analyze breast cancer concordance by comparing IHC and MammaTyper results in a Streamlit demo for biomarker profiling
python bioinformatics ihc breast-cancer clinical-data streamlit immunohistochemistry molecular-diagnostics medical-software molecular-subtype concordance-analysis mammascope mammatyper health-engineering
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Apr 17, 2026 - Python
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