Here are
50 public repositories
matching this topic...
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Updated
Sep 12, 2019
Perl
Actividad evaluativa para explorar el uso de comandos en archivos GFF3 para encontrar datos genómicos sobre el organismo modelo Dasypus novemcinctus
A web UI for the fungal version of antiSMASH.
Updated
Apr 9, 2019
JavaScript
Toolkit for handling genome annotations in various formats. Python3.
Updated
Nov 17, 2017
Python
A little script to print a gff3 file
Updated
Oct 27, 2023
Python
TIGRE is a Python CLI for large scale extraction of intergenic regions.
Updated
Nov 14, 2025
Python
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
Updated
May 29, 2021
Python
Clojure parser for the GFF3 format.
Updated
Dec 3, 2025
Clojure
This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.
Updated
Oct 31, 2025
Python
final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.
Updated
Feb 16, 2023
HTML
Extracts information from GFF and prepare them in bed format
Updated
Jul 4, 2018
Shell
Tracks Eukaryotic genome annotations (gff) from NCBI and Ensembl
Updated
Dec 23, 2025
Python
tools for handling gff files
Updated
Dec 22, 2016
Python
A tool to aggregate and load TB data to Neo4j
Updated
Dec 8, 2022
Python
This code counts the mapped nucleotide number in given SAM file according to given GFF file.
parse GFF and output a CSV file for gggenes. 解析并将 gff 中需要的内容输出到 csv 文件中以供 R 包 gggenes 调用。
Updated
Jun 11, 2024
Python
Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow
Updated
Jan 23, 2022
Python
Utility CLI for handling GFF files (incl. converting to parquet)
Updated
Nov 7, 2025
Jupyter Notebook
Scripts to index and align Bovine genome with HISAT2
Updated
May 22, 2018
Shell
Convert gtf to gff3 for JBrowse
Updated
Aug 17, 2017
Python
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