twas
Here are 22 public repositories matching this topic...
A generalized pipeline for evaluating variant effect predictors by using their scores as biological priors in TWAS/PWAS
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Aug 24, 2026 - Python
End-to-end TWAS pipeline for Alzheimer's disease integrating Kunkle et al. (2019) GWAS summary statistics with GTEx v8 MASHR brain eQTL models to identify causal genes via cross-tissue omnibus regression and functional pathway over-representation analysis.
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Jun 9, 2026 - Python
Proof-governed Agent Skill for Mendelian randomization, shared genetics, claim boundaries, manuscript QA, and submission handoff.
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Aug 17, 2026 - Python
RAISING: Automated deep learning framework
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Nov 25, 2024 - Python
Analysis of Multimodal Bulk-RNAseq data in Dorsolateral Prefrontal Cortex of Alzheimer’s Disease
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Jul 3, 2026 - R
Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.
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Dec 11, 2017 - C++
Factored QTL analysis applied to GTEx and GWAS of 114 complex traits
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Apr 27, 2020 - R
Analysis of transcriptome imputation using paired genotype-expression data from SAGE and GEUVADIS
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Jul 1, 2020 - R
Optimizing transcriptome prediction models for use in multi-ethnic TWAS using multivariate adaptive shrinkage.
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Jul 17, 2023 - R
tool for continuously integrated meta-resource
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Mar 25, 2021 - Python
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
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Jun 2, 2021 - Jupyter Notebook
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
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Jun 18, 2023 - Shell
PhenoPLIER
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Apr 8, 2024 - Jupyter Notebook
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