Boost learning for GNNs from the graph structure under challenging heterophily settings. (NeurIPS'20)
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Jun 18, 2025 - Python
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signac
Here are 19 public repositories matching this topic...
Reproducible exploration of organic photovoltaic morphology self-assembly using molecular dynamics.
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Jan 29, 2024 - Python
Integration of the `fbpic` PIC code with the `signac` framework.
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Oct 18, 2023 - Python
ThunderBio scRNA-seq pipeline
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Dec 16, 2024 - Shell
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Apr 10, 2024 - HTML
Slides and notebooks demonstrating signac for PyData Ann Arbor Meetup 2018
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Aug 7, 2018 - HTML
Hypothesis-first experiment tracking for agent-driven ML research, wired into Claude Code.
python research reproducible-research mcp agents hypothesis autonomous-agents ai-agents claude signac mlops experiment-tracking wandb agentic-ai mcp-server ml-research claude-code
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Aug 24, 2026 - Python
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Jul 29, 2026 - R
Helper functions and classes for signac-flow projects
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Jun 10, 2017 - Python
scRNA-seq and scATAC-seq utilities
rna-seq atac-seq transcriptomics single-cell single-cell-rna-seq signac single-cell-atac-seq seurat chromatin-accessibiity scenic
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Jun 10, 2024 - R
snRNA+snATAC multiome of AD DLPFC microglia — chromVAR motif analysis, WNN integration, peak-to-gene linkage, Monocle3 trajectory | Signac · Seurat · R
bioinformatics r atac-se
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q single-cell alzheimers-disease epigenomics signac seurat microglia snrna-seq multiome monocle3 snatac-seq chromvar peak-to-gene
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Jun 29, 2026 - R
Complete scATAC-seq analysis of PBMC data using Signac — QC, TF-IDF normalization, LSI dimensionality reduction, clustering, gene activity scoring and cell type annotation
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Jun 4, 2026 - R
Slides and demos for the MICDE CNSCCS Symposium, October 15, 2018
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Oct 15, 2018 - Jupyter Notebook
scATAC-seq pipeline mapping mucosal immunity and host-microbe crosstalk. Profiles physical chromatin accessibility of Trm cells (Itgae/CD103) and Secretory IgA Plasma cells (Igj) to decode intestinal defense mechanisms.
bioinformatics epigenetics signac single-cell-atac-seq seurat systems-immunology mucosal-immunity tissue-resident-t-cells iga-plasma-cells host-microbe-crosstalk
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Apr 3, 2026 - R
Reproducible benchmark reranking Signac LinkPeaks candidate peak–gene links from PBMC multiome data, with SCENT validation and explicit promoter-proximity controls.
benchmark bioinformatics snakemake reproducible-research scrna-seq single-cell signac seurat scatac-seq multiome peak-gene-links
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Aug 23, 2026 - R
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