NicheNet: predict active ligand-target links between interacting cells
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
BANKSY: spatial clustering
Find causal cell-types underlying complex trait genetics
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
R Package for Single-Cell Dataset Processing and Visualization
Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.
It contains the functional code to analyze P2 scRNA-seq and scATAC-seq data.
A Toolbox for Spatial Transcriptomics Analysis
The code repository for the manuscript "Dissecting the epigenome dynamics in human immune cells upon viral and chemical exposure by multimodal single-cell profiling"
Repository for projects in Single Cell
A R Shiny App for single-cell analysis
R Shiny app for Vitessce, an integrative and interactive data visualization tool for exploration of spatial single-cell experiments.
Documentation analysis and manuscript figures of QuRIE-seq methods paper.
Visualization of gene expression from single-cell RNA-sequencing data
Documentation analysis and manuscript figures
Add a description, image, and links to the single-cell-omics topic page so that developers can more easily learn about it.
To associate your repository with the single-cell-omics topic, visit your repo's landing page and select "manage topics."