Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
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Apr 9, 2026 - Nextflow
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open-chromatin-regions
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A de novo prediction tool of chromatin accessible regions for plant genomes
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Aug 12, 2021 - Python
A unified framework for discovering, analyzing, integrating, and visualizing regulatory motifs and transcription factor binding sites across bulk, single-cell, and long-read sequencing modalities.
dnase-seq motif epigenetics chip-seq atac-seq histone-modifications dna-methylation motif-discovery regulatory-network motif-analysis differential-peak-calling histone-variants epigenome transcription-factor-binding-site open-chromatin-regions regulatory-genomics transcription-factor-footprinting motif-detection transcription-
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Apr 16, 2026 - Python
gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials
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Jan 28, 2025 - Python
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