Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
-
Updated
Aug 18, 2025 - Python
#
fastq-files
Here are 77 public repositories matching this topic...
FASTQ compression
-
Updated
Aug 15, 2023 - C
An efficient FASTQ manipulation suite
-
Updated
Jan 27, 2020 - C
Command line utility for manipulating Illumina-generated FASTQ files.
-
Updated
Dec 18, 2025 - Rust
Scripts, utilities and programs for genomic bioinformatics.
-
Updated
Nov 13, 2025 - Python
đź‘· Fasten toolkit, for streaming operations on fastq files
-
Updated
Oct 24, 2025 - Rust
Parse and process FASTA and FASTQ formatted files of biological sequences.
parsing julia bio file-format fasta fastq-format fastq fastq-files fasta-format biojulia fasta-files
-
Updated
Oct 22, 2024 - Julia
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
-
Updated
Mar 4, 2024 - C++
A versatile compressor of third generation sequencing reads.
-
Updated
Mar 24, 2024 - C++
Fast k-mer based tool for multi locus sequence typing (MLST)
python bioinformatics mlst kmer bacterial-database fastq-files bacterial-genomes applied-bioinformatics-lab
-
Updated
Sep 3, 2020 - Python
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
validation ngs sequencing scrna-seq umi single-cell fastq high-throughput-sequencing barcodes 10x drop-seq fastq-files dge umi-count fastq-filterpair digital-gene-expression fastq-validation
-
Updated
Jun 18, 2025 - C
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
-
Updated
Nov 14, 2025 - Rust
less like viewer for fastq files
-
Updated
Aug 13, 2025 - Shell
ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
-
Updated
Sep 28, 2022 - Jupyter Notebook
Software for the analysis and visualization of site-saturation mutagenesis experiments
mutagenesis dna-seq fastq-files deepsequencing sitesaturation enrichment-scores mutagenesis-visualization
-
Updated
Apr 21, 2023 - Python
Calculate fastq reads and sequencing coverage
-
Updated
Oct 20, 2020 - Shell
A simple fastp-MultiQC nextflow pipeline
-
Updated
Feb 2, 2023 - Nextflow
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
-
Updated
Dec 11, 2020 - C
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
-
Updated
Mar 27, 2020 - Shell
Datastores for reads, not your papa's FASTQ files.
files bam-files bioinformatics genomics storage biology format sequencing fastq-format bioinformatics-data sam-bam fastq fastq-files biojulia sam-file sam-files genomics-data bam-format
-
Updated
Jul 28, 2023 - Julia
Improve this page
Add a description, image, and links to the fastq-files topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the fastq-files topic, visit your repo's landing page and select "manage topics."