Showing 1–6 of 6 results for author: Caputo, M

Space of Data through the Lens of Multilevel Graph

Authors: Marco Caputo, Michele Russo, Emanuela Merelli

Abstract: This work seeks to tackle the inherent complexity of dataspaces by introducing a novel data structure that can represent datasets across multiple levels of abstraction, ranging from local to global. We propose the concept of a multilevel graph, which is equipped with two fundamental operations: contraction and expansion of its topology. This multilevel graph is specifically designed to fulfil the… ▽ More This work seeks to tackle the inherent complexity of dataspaces by introducing a novel data structure that can represent datasets across multiple levels of abstraction, ranging from local to global. We propose the concept of a multilevel graph, which is equipped with two fundamental operations: contraction and expansion of its topology. This multilevel graph is specifically designed to fulfil the requirements for incremental abstraction and flexibility, as outlined in existing definitions of dataspaces. Furthermore, we provide a comprehensive suite of methods for manipulating this graph structure, establishing a robust framework for data analysis. While its effectiveness has been empirically validated for unstructured data, its application to structured data is also inherently viable. Preliminary results are presented through a real-world scenario based on a collection of dream reports. △ Less

Submitted 30 March, 2025; originally announced March 2025.

Comments: 18 pages, 11 figures, ITADATA 2024 conference

Report number: ITADATA/2024/17

TEMSET-24K: Densely Annotated Dataset for Indexing Multipart Endoscopic Videos using Surgical Timeline Segmentation

Authors: Muhammad Bilal, Mahmood Alam, Deepa Bapu, Stephan Korsgen, Neeraj Lal, Simon Bach, Amir M Hajivanand, Muhammed Ali, Kamran Soomro, Iqbal Qasim, Paweł Capik, Aslam Khan, Zaheer Khan, Hunaid Vohra, Massimo Caputo, Andrew Beggs, Adnan Qayyum, Junaid Qadir, Shazad Ashraf

Abstract: Indexing endoscopic surgical videos is vital in surgical data science, forming the basis for systematic retrospective analysis and clinical performance evaluation. Despite its significance, current video analytics rely on manual indexing, a time-consuming process. Advances in computer vision, particularly deep learning, offer automation potential, yet progress is limited by the lack of publicly av… ▽ More Indexing endoscopic surgical videos is vital in surgical data science, forming the basis for systematic retrospective analysis and clinical performance evaluation. Despite its significance, current video analytics rely on manual indexing, a time-consuming process. Advances in computer vision, particularly deep learning, offer automation potential, yet progress is limited by the lack of publicly available, densely annotated surgical datasets. To address this, we present TEMSET-24K, an open-source dataset comprising 24,306 trans-anal endoscopic microsurgery (TEMS) video micro-clips. Each clip is meticulously annotated by clinical experts using a novel hierarchical labeling taxonomy encompassing phase, task, and action triplets, capturing intricate surgical workflows. To validate this dataset, we benchmarked deep learning models, including transformer-based architectures. Our in silico evaluation demonstrates high accuracy (up to 0.99) and F1 scores (up to 0.99) for key phases like Setup and Suturing. The STALNet model, tested with ConvNeXt, ViT, and SWIN V2 encoders, consistently segmented well-represented phases. TEMSET-24K provides a critical benchmark, propelling state-of-the-art solutions in surgical data science. △ Less

Submitted 10 February, 2025; originally announced February 2025.

Multivessel Coronary Artery Segmentation and Stenosis Localisation using Ensemble Learning

Authors: Muhammad Bilal, Dinis Martinho, Reiner Sim, Adnan Qayyum, Hunaid Vohra, Massimo Caputo, Taofeek Akinosho, Sofiat Abioye, Zaheer Khan, Waleed Niaz, Junaid Qadir

Abstract: Coronary angiography analysis is a common clinical task performed by cardiologists to diagnose coronary artery disease (CAD) through an assessment of atherosclerotic plaque's accumulation. This study introduces an end-to-end machine learning solution developed as part of our solution for the MICCAI 2023 Automatic Region-based Coronary Artery Disease diagnostics using x-ray angiography imagEs (ARCA… ▽ More Coronary angiography analysis is a common clinical task performed by cardiologists to diagnose coronary artery disease (CAD) through an assessment of atherosclerotic plaque's accumulation. This study introduces an end-to-end machine learning solution developed as part of our solution for the MICCAI 2023 Automatic Region-based Coronary Artery Disease diagnostics using x-ray angiography imagEs (ARCADE) challenge, which aims to benchmark solutions for multivessel coronary artery segmentation and potential stenotic lesion localisation from X-ray coronary angiograms. We adopted a robust baseline model training strategy to progressively improve performance, comprising five successive stages of binary class pretraining, multivessel segmentation, fine-tuning using class frequency weighted dataloaders, fine-tuning using F1-based curriculum learning strategy (F1-CLS), and finally multi-target angiogram view classifier-based collective adaptation. Unlike many other medical imaging procedures, this task exhibits a notable degree of interobserver variability. %, making it particularly amenable to automated analysis. Our ensemble model combines the outputs from six baseline models using the weighted ensembling approach, which our analysis shows is found to double the predictive accuracy of the proposed solution. The final prediction was further refined, targeting the correction of misclassified blobs. Our solution achieved a mean F1 score of $37.69\%$ for coronary artery segmentation, and $39.41\%$ for stenosis localisation, positioning our team in the 5th position on both leaderboards. This work demonstrates the potential of automated tools to aid CAD diagnosis, guide interventions, and improve the accuracy of stent injections in clinical settings. △ Less

Submitted 27 October, 2023; originally announced October 2023.

Comments: Submission report for ARCADE challenge hosted at MICCAI2023

Robust Surgical Tools Detection in Endoscopic Videos with Noisy Data

Authors: Adnan Qayyum, Hassan Ali, Massimo Caputo, Hunaid Vohra, Taofeek Akinosho, Sofiat Abioye, Ilhem Berrou, Paweł Capik, Junaid Qadir, Muhammad Bilal

Abstract: Over the past few years, surgical data science has attracted substantial interest from the machine learning (ML) community. Various studies have demonstrated the efficacy of emerging ML techniques in analysing surgical data, particularly recordings of procedures, for digitizing clinical and non-clinical functions like preoperative planning, context-aware decision-making, and operating skill assess… ▽ More Over the past few years, surgical data science has attracted substantial interest from the machine learning (ML) community. Various studies have demonstrated the efficacy of emerging ML techniques in analysing surgical data, particularly recordings of procedures, for digitizing clinical and non-clinical functions like preoperative planning, context-aware decision-making, and operating skill assessment. However, this field is still in its infancy and lacks representative, well-annotated datasets for training robust models in intermediate ML tasks. Also, existing datasets suffer from inaccurate labels, hindering the development of reliable models. In this paper, we propose a systematic methodology for developing robust models for surgical tool detection using noisy data. Our methodology introduces two key innovations: (1) an intelligent active learning strategy for minimal dataset identification and label correction by human experts; and (2) an assembling strategy for a student-teacher model-based self-training framework to achieve the robust classification of 14 surgical tools in a semi-supervised fashion. Furthermore, we employ weighted data loaders to handle difficult class labels and address class imbalance issues. The proposed methodology achieves an average F1-score of 85.88\% for the ensemble model-based self-training with class weights, and 80.88\% without class weights for noisy labels. Also, our proposed method significantly outperforms existing approaches, which effectively demonstrates its effectiveness. △ Less

Submitted 3 July, 2023; originally announced July 2023.

Intuitive Surgical SurgToolLoc and SurgVU Challenges Results: 2022-2025

Authors: Aneeq Zia, Max Berniker, Rogerio Garcia Nespolo, Xiaorui Zhang, Conor Perreault, Kiran Bhattacharyya, Xi Liu, Ziheng Wang, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Bo Liu, David Austin, Yiheng Wang, Michal Futrega, Jean-Francois Puget, Zhenqiang Li, Yoichi Sato, Ryo Fujii, Ryo Hachiuma, Mana Masuda, Hideo Saito, An Wang, Mengya Xu, Mobarakol Islam , et al. (131 additional authors not shown)

Abstract: Robotic assisted (RA) surgery promises to transform surgical intervention. Intuitive Surgical is committed to fostering these changes and the machine learning models and algorithms that will enable them. With these goals in mind we have invited the surgical data science community to participate in a yearly competition hosted through the Medical Imaging Computing and Computer Assisted Interventions… ▽ More Robotic assisted (RA) surgery promises to transform surgical intervention. Intuitive Surgical is committed to fostering these changes and the machine learning models and algorithms that will enable them. With these goals in mind we have invited the surgical data science community to participate in a yearly competition hosted through the Medical Imaging Computing and Computer Assisted Interventions (MICCAI) conference. With varying changes from year to year, we have challenged the community to solve difficult machine learning problems in the context of advanced RA applications. Here we document the results of these challenges, focusing on surgical tool localization (SurgToolLoc) and surgical visual understanding (SurgVU). The publicly released dataset that accompanies these challenges is detailed in a separate paper arXiv:2501.09209 [1]. △ Less

Submitted 15 May, 2026; v1 submitted 11 May, 2023; originally announced May 2023.

Can We Revitalize Interventional Healthcare with AI-XR Surgical Metaverses?

Authors: Adnan Qayyum, Muhammad Bilal, Muhammad Hadi, Paweł Capik, Massimo Caputo, Hunaid Vohra, Ala Al-Fuqaha, Junaid Qadir

Abstract: Recent advancements in technology, particularly in machine learning (ML), deep learning (DL), and the metaverse, offer great potential for revolutionizing surgical science. The combination of artificial intelligence and extended reality (AI-XR) technologies has the potential to create a surgical metaverse, a virtual environment where surgeries can be planned and performed. This paper aims to provi… ▽ More Recent advancements in technology, particularly in machine learning (ML), deep learning (DL), and the metaverse, offer great potential for revolutionizing surgical science. The combination of artificial intelligence and extended reality (AI-XR) technologies has the potential to create a surgical metaverse, a virtual environment where surgeries can be planned and performed. This paper aims to provide insight into the various potential applications of an AI-XR surgical metaverse and the challenges that must be addressed to bring its full potential to fruition. It is important for the community to focus on these challenges to fully realize the potential of the AI-XR surgical metaverses. Furthermore, to emphasize the need for secure and robust AI-XR surgical metaverses and to demonstrate the real-world implications of security threats to the AI-XR surgical metaverses, we present a case study in which the ``an immersive surgical attack'' on incision point localization is performed in the context of preoperative planning in a surgical metaverse. △ Less

Submitted 25 March, 2023; originally announced April 2023.

Comments: To appear in IEEE Metacom, this is a preprint author copy