Showing 1–50 of 162 results for author: Jha, D

Benchmarking the Domain Gap: Model Selection Instability Under Domain Shift in Video Capsule Endoscopy

Authors: Dan Hanson, Debesh Jha

Abstract: Video capsule endoscopy (VCE) classification is typically evaluated within a single dataset, yet clinical deployment demands robustness across acquisition sources, labeling policies, and patient populations. We examine this gap using Kvasir-Capsule, Capsule Vision 2024 (CV2024), and a shared-label subset of Galar. We fine-tune a suite of general-domain pretrained backbones on the official Kvasir-C… ▽ More Video capsule endoscopy (VCE) classification is typically evaluated within a single dataset, yet clinical deployment demands robustness across acquisition sources, labeling policies, and patient populations. We examine this gap using Kvasir-Capsule, Capsule Vision 2024 (CV2024), and a shared-label subset of Galar. We fine-tune a suite of general-domain pretrained backbones on the official Kvasir-Capsule folds under a standardized protocol and evaluate the same checkpoints on two non-source targets within a documented shared-label decision space. We find that the predictive value of in-domain ranking is target-dependent: Kvasir-Capsule ranking aligns more closely with Galar than with CV2024, while the two non-source targets agree only weakly. Consequently, the strongest in-domain backbone leads on one target yet falls to mid-pack on the other, and no single evaluation target reliably predicts the others. A second CV2024-trained configuration set reproduces this target-dependent instability. We conclude that capsule endoscopy model selection should report cross-target ranking stability rather than peak single-dataset performance. △ Less

Submitted 22 July, 2026; originally announced July 2026.

Comments: 13 pages

Induce to Empower: Improving Lightweight Baselines via Foundation Model Induction for Generalized Polyp Segmentation

Authors: Shivanshu Agnihotri, Snehashis Majhi, Deepak Ranjan Nayak, Dwarikanath Mahapatra, Debesh Jha

Abstract: Automated polyp segmentation in colonoscopy continues to pose challenges due to substantial appearance variations and indistinct polyp boundaries. Although emerging foundation models (FMs) such as DINOv2, SAM, and OneFormer, demonstrate remarkable generalization capabilities, their direct transfer to the polyp segmentation task and deployment in real-time clinical settings are difficult due to lac… ▽ More Automated polyp segmentation in colonoscopy continues to pose challenges due to substantial appearance variations and indistinct polyp boundaries. Although emerging foundation models (FMs) such as DINOv2, SAM, and OneFormer, demonstrate remarkable generalization capabilities, their direct transfer to the polyp segmentation task and deployment in real-time clinical settings are difficult due to lack of large-scale labeled data and high computational demands. In addition, adopting multiple FMs together raises concerns, even though they encode complementary semantic and structural information. While lightweight models, including U-Net, PraNet and U-Net++, are computationally efficient, they often struggle to generalize across datasets due to limited representational capacity. To address this gap, we propose Lite-Polyp Inductor (Lite-Pi), a novel foundation model induction framework that significantly enhances lightweight polyp segmentation baselines. Our proposed framework generates FM-specific prototype representations and aligns them semantically with the corresponding foundation model priors through reconstruction-based supervision. Subsequently, transformer-based fusion is introduced to highlight the polyp relevant representations, including salient boundary information, while preserving complementary semantic cues. Extensive experiments across five polyp segmentation benchmark datasets demonstrate that Lite-π significantly improves lightweight baselines, achieving superior generalization performance with minimal computational overhead and thereby, offering a practical solution for generalized polyp segmentation. Our code is available at GitHub. https://github.com/lostinrepo/Lite-Pi △ Less

Submitted 19 July, 2026; originally announced July 2026.

IMBench: A Benchmark for Intuitive Robotic Manipulation

Authors: Anurag Maurya, Sukhvansh Jain, Prajwal Avhad, Gautham Balachandran, Ziyi Zhou, Atharva Kshirsagar, Satyam Singh, Bowen Li. Rishabh Mukund, Ritul Singh, Jatin Vira, Suvonil Chatterjee, Devesh K. Jha

Abstract: Humans combine reasoning and motor control to solve complex manipulation tasks under diverse constraints. They build an understanding of the physical world that helps them convert reasoning into actions and quickly adapt to new scenes, tasks, and rules. We refer to this capability as intuitive manipulation. Existing benchmarks fail to capture this integration: they evaluate physical reasoning in i… ▽ More Humans combine reasoning and motor control to solve complex manipulation tasks under diverse constraints. They build an understanding of the physical world that helps them convert reasoning into actions and quickly adapt to new scenes, tasks, and rules. We refer to this capability as intuitive manipulation. Existing benchmarks fail to capture this integration: they evaluate physical reasoning in isolation from execution, or measure policy performance without requiring explicit reasoning. We introduce IMBENCH, a benchmark designed to evaluate intuitive manipulation as an integrated capability spanning perception, physical reasoning, action generation, and iterative execution. Our tasks require models to infer task-relevant physical structure and generate feasible action sequences under explicit constraints, including contact-rich manipulation, tool use, and multi-stage dependencies. We introduce a benchmark of 35 tasks, 14K filtered trajectories, and scalable tools for generating diverse scenarios. Experiments reveal a consistent gap: vision language models show partial physical reasoning ability but fail to produce executable plans, while state-of-the-art vision-language-action models struggle to satisfy task constraints and generalize across scenarios. These results identify intuitive manipulation as a missing axis in current foundation models and generalist robot policies, and position IMBENCH as a step toward evaluating and enabling more integrated, adaptive physical intelligence. △ Less

Submitted 17 July, 2026; originally announced July 2026.

Comments: Accepted to SemRob Workshop, RSS 2026. Project Website: https://imbench.org/

Revisiting LLM Adaptation for 3D CT Report Generation: A Study of Scaling and Diagnostic Priors

Authors: Vanshali Sharma, Andrea M. Bejar, Halil Ertugrul Aktas, Quoc-Huy Trinh, Debesh Jha, Gorkem Durak, Ulas Bagci

Abstract: Recent advances in multimodal learning, including large language models (LLMs) and vision-language models (VLMs), have demonstrated strong adaptability to natural images. However, extending their use to the medical domain, particularly for volumetric (3D) images, is challenging due to high computational complexity, volumetric dependencies and the semantic gap between visual features and clinical t… ▽ More Recent advances in multimodal learning, including large language models (LLMs) and vision-language models (VLMs), have demonstrated strong adaptability to natural images. However, extending their use to the medical domain, particularly for volumetric (3D) images, is challenging due to high computational complexity, volumetric dependencies and the semantic gap between visual features and clinical terminology. Naively fine-tuning LLMs on limited medical data often leads to overfitting and clinical hallucination, where linguistic fluency is prioritized over clinical factuality. In this study, we investigate parameter-efficient adaptation strategies for volumetric CT report generation and introduce RAD3D-Prefix, a lightweight diagnostic-prior conditioning framework that minimizes the need for extensive parameter training. This module integrates image embeddings with multi-label diagnostic classification logits, preserving critical clinical details while bridging the semantic gap. By keeping the LLM frozen, our method requires minimal trainable parameters and mitigates the risk of overfitting on small, domain-specific datasets. Through a systematic study spanning LLMs from 96.1M to 1.6B parameters, we find that fine-tuning is most beneficial for smaller LLMs, whereas freezing larger (~1B+ LLMs and training only lightweight projection layers provides a superior trade-off between performance, generalization, and computational efficiency. Across multiple automatic metrics and a clinical reader study, RAD3D-Prefix outperforms comparable parameter-efficient baselines and demonstrates strong out-of-domain generalization while using substantially fewer trainable parameters than fully fine-tuned alternatives. △ Less

Submitted 15 June, 2026; originally announced June 2026.

BRo-JEPA: Learning Modular Transformations in Latent Space

Authors: Divyansh Jha, Yuanfang Xie, Brennen Yu, Varan Mehra

Abstract: Can neural networks learn algebraic rules from visual inputs, or do they merely fit observed patterns? We study this question using MNIST (or EMNIST letters) as states and modular arithmetic operations as actions in a JEPA-style world model. Standard supervised and JEPA baselines with operation embeddings achieve high accuracy on seen operations but fail to extrapolate reliably to unseen operation… ▽ More Can neural networks learn algebraic rules from visual inputs, or do they merely fit observed patterns? We study this question using MNIST (or EMNIST letters) as states and modular arithmetic operations as actions in a JEPA-style world model. Standard supervised and JEPA baselines with operation embeddings achieve high accuracy on seen operations but fail to extrapolate reliably to unseen operations. We propose BRo-JEPA, a world model with a block-rotation predictor that represents arithmetic operations as rotations, resulting in the cyclic structure of modular arithmetic in latent space. By applying actions as rotations, the BRo-JEPA predictor learns the rotation angles to align the latent representations with the underlying modular structure which enables strict zero-shot operation generalization. While our best block-rotation supervised baseline reaches only 54.54% zero-shot accuracy on MNIST and 25.13% on EMNIST, BRo-JEPA with a ResNet-18 encoder achieves 99.44% and 94.35% respectively, despite being trained only on the primitive operations $\pm$1. Our results suggest that world models can learn algebraic rules when the latent transformations encode the underlying modular structure. Code is available \href{https://github.com/DL-World-Models/brojepa}{here}. △ Less

Submitted 18 August, 2026; v1 submitted 31 May, 2026; originally announced June 2026.

Comments: 20 pages, 14 figures

Cloud-native and Distributed Systems for Efficient and Scalable Large Language Models -- A Research Agenda

Authors: Minxian Xu, Jingfeng Wu, Shengye Song, Satish Narayana Srirama, Bahman Javad, Rajiv Ranjan, Devki Nandan Jha, Sa Wang, Wenhong Tian, Huanle Xu, Li Li, Zizhao Mo, Shuo Ren, Thomas Kunz, Petar Kochovski, Vlado Stankovski, Kejiang Ye, Chengzhong Xu, Rajkumar Buyya

Abstract: The rapid rise of Large Language Models (LLMs) has revolutionized various artificial intelligence (AI) applications, from natural language processing to code generation. However, the computational demands of these models, particularly in training and inference, present significant challenges. Traditional systems are often unable to meet these requirements, necessitating the integration of cloud-na… ▽ More The rapid rise of Large Language Models (LLMs) has revolutionized various artificial intelligence (AI) applications, from natural language processing to code generation. However, the computational demands of these models, particularly in training and inference, present significant challenges. Traditional systems are often unable to meet these requirements, necessitating the integration of cloud-native and distributed architectures. This paper explores the role of cloud platforms and distributed systems in supporting the scalability, efficiency, and optimization of LLMs. We discuss the complexities of LLM deployment, including data management, resource optimization, and the need for microservices, autoscaling, and hybrid cloud-edge solutions. Additionally, we examine emerging research trends, such as serverless inference, quantum computing, and federated learning, and their potential to drive the next phase of LLM innovation. The paper concludes with a roadmap for future developments, emphasizing the need for continued research, standardization, and cross-sector collaboration to sustain the growth of LLMs in both research and enterprise applications. △ Less

Submitted 18 April, 2026; originally announced April 2026.

Comments: 45 pages, 5 figures

Firebolt-VL: Efficient Vision-Language Understanding with Cross-Modality Modulation

Authors: Quoc-Huy Trinh, Mustapha Abdullahi, Bo Zhao, Debesh Jha

Abstract: Recent advances in multimodal large language models (MLLMs) have enabled impressive progress in vision-language understanding, yet their high computational cost limits deployment in resource-constrained scenarios such as personal assistants, document understanding, and smart cameras. Most existing methods rely on Transformer-based cross-attention, whose quadratic complexity hinders efficiency. Mor… ▽ More Recent advances in multimodal large language models (MLLMs) have enabled impressive progress in vision-language understanding, yet their high computational cost limits deployment in resource-constrained scenarios such as personal assistants, document understanding, and smart cameras. Most existing methods rely on Transformer-based cross-attention, whose quadratic complexity hinders efficiency. Moreover, small vision-language models often struggle to precisely capture fine-grained, task-relevant visual regions, leading to degraded performance on fine-grained reasoning tasks that limit their effectiveness in the real world. To address these issues, we introduce Firebolt-VL, an efficient vision-language model that replaces the Transformer-based decoder with a Liquid Foundation Model (LFM) decoder. To further enhance visual grounding, we propose a Token-Grid Correlation Module, which computes lightweight correlations between text tokens and image patches and modulates via the state-space model with FiLM conditioning. This enables the model to selectively emphasize visual regions relevant to the textual prompt while maintaining linear-time inference. Experimental results across multiple benchmarks demonstrate that Firebolt-VL achieves accurate, fine-grained understanding with significantly improved efficiency. Our model and code are available at: https://fireboltvl.github.io △ Less

Submitted 7 April, 2026; v1 submitted 6 April, 2026; originally announced April 2026.

Comments: arXiv admin note: substantial text overlap with arXiv:2511.11177

PPGuide: Steering Diffusion Policies with Performance Predictive Guidance

Authors: Zixing Wang, Devesh K. Jha, Ahmed H. Qureshi, Diego Romeres

Abstract: Diffusion policies have shown to be very efficient at learning complex, multi-modal behaviors for robotic manipulation. However, errors in generated action sequences can compound over time which can potentially lead to failure. Some approaches mitigate this by augmenting datasets with expert demonstrations or learning predictive world models which might be computationally expensive. We introduce P… ▽ More Diffusion policies have shown to be very efficient at learning complex, multi-modal behaviors for robotic manipulation. However, errors in generated action sequences can compound over time which can potentially lead to failure. Some approaches mitigate this by augmenting datasets with expert demonstrations or learning predictive world models which might be computationally expensive. We introduce Performance Predictive Guidance (PPGuide), a lightweight, classifier-based framework that steers a pre-trained diffusion policy away from failure modes at inference time. PPGuide makes use of a novel self-supervised process: it uses attention-based multiple instance learning to automatically estimate which observation-action chunks from the policy's rollouts are relevant to success or failure. We then train a performance predictor on this self-labeled data. During inference, this predictor provides a real-time gradient to guide the policy toward more robust actions. We validated our proposed PPGuide across a diverse set of tasks from the Robomimic and MimicGen benchmarks, demonstrating consistent improvements in performance. △ Less

Submitted 11 March, 2026; originally announced March 2026.

Comments: Accepted by ICRA'26

EVECTOR: An orchestrator for analysing attacks in electric vehicles charging system

Authors: Devki Nandan Jha, Tomasz Szydlo, Nima Valizadeh, Ringo Sham, Aleksandra Edwards, Amrit Kumar, Amanjot Kaur, Bo Wei, Vijay Kumar, Kai Li Lim, Rajiv Ranjan, Omer Rana

Abstract: Electric Vehicle (EV) charging infrastructure is critical for the widespread adoption of EVs, ensuring efficient and secure charging processes. Evaluating the security and performance of EV charging systems in real-world infrastructure poses significant challenges due to the diversity of information exchange between vehicles and charging stations/Electric Vehicle Supply Equipment (EVSE), including… ▽ More Electric Vehicle (EV) charging infrastructure is critical for the widespread adoption of EVs, ensuring efficient and secure charging processes. Evaluating the security and performance of EV charging systems in real-world infrastructure poses significant challenges due to the diversity of information exchange between vehicles and charging stations/Electric Vehicle Supply Equipment (EVSE), including complex network protocols, scale of deployment and a variety of potential threats. Existing simulation frameworks are unable to handle complex security scenarios across these differing data exchange protocols. In this paper, we propose a novel EV orchestration framework: EVECTOR, which addresses the limitations of existing simulation systems by enabling both quantitative and qualitative analyses of EV charging scenarios. EVECTOR also provides a flexible attack orchestrator to simulate realistic attack behaviours on EV charging infrastructure. We validate the EVECTOR framework through two case studies: (a) cyber-physical attacks such as broken wire; and (b) cyber-specific attacks such as frame fuzzification. The case studies highlight the effectiveness of EVECTOR in providing deeper insights into the security and performance of EV charging systems. △ Less

Submitted 14 February, 2026; originally announced February 2026.

Simultaneous Extrinsic Contact and In-Hand Pose Estimation via Distributed Tactile Sensing

Authors: Mark Van der Merwe, Kei Ota, Dmitry Berenson, Nima Fazeli, Devesh K. Jha

Abstract: Prehensile autonomous manipulation, such as peg insertion, tool use, or assembly, require precise in-hand understanding of the object pose and the extrinsic contacts made during interactions. Providing accurate estimation of pose and contacts is challenging. Tactile sensors can provide local geometry at the sensor and force information about the grasp, but the locality of sensing means resolving p… ▽ More Prehensile autonomous manipulation, such as peg insertion, tool use, or assembly, require precise in-hand understanding of the object pose and the extrinsic contacts made during interactions. Providing accurate estimation of pose and contacts is challenging. Tactile sensors can provide local geometry at the sensor and force information about the grasp, but the locality of sensing means resolving poses and contacts from tactile alone is often an ill-posed problem, as multiple configurations can be consistent with the observations. Adding visual feedback can help resolve ambiguities, but can suffer from noise and occlusions. In this work, we propose a method that pairs local observations from sensing with the physical constraints of contact. We propose a set of factors that ensure local consistency with tactile observations as well as enforcing physical plausibility, namely, that the estimated pose and contacts must respect the kinematic and force constraints of quasi-static rigid body interactions. We formalize our problem as a factor graph, allowing for efficient estimation. In our experiments, we demonstrate that our method outperforms existing geometric and contact-informed estimation pipelines, especially when only tactile information is available. Video results can be found at https://tacgraph.github.io/. △ Less

Submitted 29 December, 2025; originally announced December 2025.

Comments: 8 pages. IEEE Robotics and Automation Letters, 2026

From SAM to DINOv2: Towards Distilling Foundation Models to Lightweight Baselines for Generalized Polyp Segmentation

Authors: Shivanshu Agnihotri, Snehashis Majhi, Deepak Ranjan Nayak, Debesh Jha

Abstract: Accurate polyp segmentation during colonoscopy is critical for the early detection of colorectal cancer and still remains challenging due to significant size, shape, and color variations, and the camouflaged nature of polyps. While lightweight baseline models such as U-Net, U-Net++, and PraNet offer advantages in terms of easy deployment and low computational cost, they struggle to deal with the a… ▽ More Accurate polyp segmentation during colonoscopy is critical for the early detection of colorectal cancer and still remains challenging due to significant size, shape, and color variations, and the camouflaged nature of polyps. While lightweight baseline models such as U-Net, U-Net++, and PraNet offer advantages in terms of easy deployment and low computational cost, they struggle to deal with the above issues, leading to limited segmentation performance. In contrast, large-scale vision foundation models such as SAM, DINOv2, OneFormer, and Mask2Former have exhibited impressive generalization performance across natural image domains. However, their direct transfer to medical imaging tasks (e.g., colonoscopic polyp segmentation) is not straightforward, primarily due to the scarcity of large-scale datasets and lack of domain-specific knowledge. To bridge this gap, we propose a novel distillation framework, Polyp-DiFoM, that transfers the rich representations of foundation models into lightweight segmentation baselines, allowing efficient and accurate deployment in clinical settings. In particular, we infuse semantic priors from the foundation models into canonical architectures such as U-Net and U-Net++ and further perform frequency domain encoding for enhanced distillation, corroborating their generalization capability. Extensive experiments are performed across five benchmark datasets, such as Kvasir-SEG, CVC-ClinicDB, ETIS, ColonDB, and CVC-300. Notably, Polyp-DiFoM consistently outperforms respective baseline models significantly, as well as the state-of-the-art model, with nearly 9 times reduced computation overhead. The code is available at https://github.com/lostinrepo/PolypDiFoM. △ Less

Submitted 9 December, 2025; originally announced December 2025.

Robot Confirmation Generation and Action Planning Using Long-context Q-Former Integrated with Multimodal LLM

Authors: Chiori Hori, Yoshiki Masuyama, Siddarth Jain, Radu Corcodel, Devesh Jha, Diego Romeres, Jonathan Le Roux

Abstract: Human-robot collaboration towards a shared goal requires robots to understand human action and interaction with the surrounding environment. This paper focuses on human-robot interaction (HRI) based on human-robot dialogue that relies on the robot action confirmation and action step generation using multimodal scene understanding. The state-of-the-art approach uses multimodal transformers to gener… ▽ More Human-robot collaboration towards a shared goal requires robots to understand human action and interaction with the surrounding environment. This paper focuses on human-robot interaction (HRI) based on human-robot dialogue that relies on the robot action confirmation and action step generation using multimodal scene understanding. The state-of-the-art approach uses multimodal transformers to generate robot action steps aligned with robot action confirmation from a single clip showing a task composed of multiple micro steps. Although actions towards a long-horizon task depend on each other throughout an entire video, the current approaches mainly focus on clip-level processing and do not leverage long-context information. This paper proposes a long-context Q-former incorporating left and right context dependency in full videos. Furthermore, this paper proposes a text-conditioning approach to feed text embeddings directly into the LLM decoder to mitigate the high abstraction of the information in text by Q-former. Experiments with the YouCook2 corpus show that the accuracy of confirmation generation is a major factor in the performance of action planning. Furthermore, we demonstrate that the long-context Q-former improves the confirmation and action planning by integrating VideoLLaMA3. △ Less

Submitted 21 November, 2025; originally announced November 2025.

Comments: Accepted to ASRU 2025

When CNNs Outperform Transformers and Mambas: Revisiting Deep Architectures for Dental Caries Segmentation

Authors: Aashish Ghimire, Jun Zeng, Roshan Paudel, Nikhil Kumar Tomar, Deepak Ranjan Nayak, Harshith Reddy Nalla, Vivek Jha, Glenda Reynolds, Debesh Jha

Abstract: Accurate identification and segmentation of dental caries in panoramic radiographs are critical for early diagnosis and effective treatment planning. Automated segmentation remains challenging due to low lesion contrast, morphological variability, and limited annotated data. In this study, we present the first comprehensive benchmarking of convolutional neural networks, vision transformers and sta… ▽ More Accurate identification and segmentation of dental caries in panoramic radiographs are critical for early diagnosis and effective treatment planning. Automated segmentation remains challenging due to low lesion contrast, morphological variability, and limited annotated data. In this study, we present the first comprehensive benchmarking of convolutional neural networks, vision transformers and state-space mamba architectures for automated dental caries segmentation on panoramic radiographs through a DC1000 dataset. Twelve state-of-the-art architectures, including VMUnet, MambaUNet, VMUNetv2, RMAMamba-S, TransNetR, PVTFormer, DoubleU-Net, and ResUNet++, were trained under identical configurations. Results reveal that, contrary to the growing trend toward complex attention based architectures, the CNN-based DoubleU-Net achieved the highest dice coefficient of 0.7345, mIoU of 0.5978, and precision of 0.8145, outperforming all transformer and Mamba variants. In the study, the top 3 results across all performance metrics were achieved by CNN-based architectures. Here, Mamba and transformer-based methods, despite their theoretical advantage in global context modeling, underperformed due to limited data and weaker spatial priors. These findings underscore the importance of architecture-task alignment in domain-specific medical image segmentation more than model complexity. Our code is available at: https://github.com/JunZengz/dental-caries-segmentation. △ Less

Submitted 18 November, 2025; originally announced November 2025.

Comments: 8 pages, 4 figures

Analytic Conditions for Differentiable Collision Detection in Trajectory Optimization

Authors: Akshay Jaitly, Devesh K. Jha, Kei Ota, Yuki Shirai

Abstract: Optimization-based methods are widely used for computing fast, diverse solutions for complex tasks such as collision-free movement or planning in the presence of contacts. However, most of these methods require enforcing non-penetration constraints between objects, resulting in a non-trivial and computationally expensive problem. This makes the use of optimization-based methods for planning and co… ▽ More Optimization-based methods are widely used for computing fast, diverse solutions for complex tasks such as collision-free movement or planning in the presence of contacts. However, most of these methods require enforcing non-penetration constraints between objects, resulting in a non-trivial and computationally expensive problem. This makes the use of optimization-based methods for planning and control challenging. In this paper, we present a method to efficiently enforce non-penetration of sets while performing optimization over their configuration, which is directly applicable to problems like collision-aware trajectory optimization. We introduce novel differentiable conditions with analytic expressions to achieve this. To enforce non-collision between non-smooth bodies using these conditions, we introduce a method to approximate polytopes as smooth semi-algebraic sets. We present several numerical experiments to demonstrate the performance of the proposed method and compare the performance with other baseline methods recently proposed in the literature. △ Less

Submitted 30 September, 2025; originally announced September 2025.

Comments: 8 pages, 8 figures. Accepted to the IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) 2025

TinyAC: Bringing Autonomic Computing Principles to Resource-Constrained Systems

Authors: Wojciech Kalka, Ruitao Xue, Kamil Faber, Aleksander Slominski, Devki Jha, Rajiv Ranjan, Tomasz Szydlo

Abstract: Autonomic Computing (AC) is a promising approach for developing intelligent and adaptive self-management systems at the deep network edge. In this paper, we present the problems and challenges related to the use of AC for IoT devices. Our proposed hybrid approach bridges bottom-up intelligence (TinyML and on-device learning) and top-down guidance (LLMs) to achieve a scalable and explainable approa… ▽ More Autonomic Computing (AC) is a promising approach for developing intelligent and adaptive self-management systems at the deep network edge. In this paper, we present the problems and challenges related to the use of AC for IoT devices. Our proposed hybrid approach bridges bottom-up intelligence (TinyML and on-device learning) and top-down guidance (LLMs) to achieve a scalable and explainable approach for developing intelligent and adaptive self-management tiny systems. Moreover, we argue that TinyAC systems require self-adaptive features to handle problems that may occur during their operation. Finally, we identify gaps, discuss existing challenges and future research directions. △ Less

Submitted 17 September, 2025; originally announced September 2025.

In-Context Iterative Policy Improvement for Dynamic Manipulation

Authors: Mark Van der Merwe, Devesh Jha

Abstract: Attention-based architectures trained on internet-scale language data have demonstrated state of the art reasoning ability for various language-based tasks, such as logic problems and textual reasoning. Additionally, these Large Language Models (LLMs) have exhibited the ability to perform few-shot prediction via in-context learning, in which input-output examples provided in the prompt are general… ▽ More Attention-based architectures trained on internet-scale language data have demonstrated state of the art reasoning ability for various language-based tasks, such as logic problems and textual reasoning. Additionally, these Large Language Models (LLMs) have exhibited the ability to perform few-shot prediction via in-context learning, in which input-output examples provided in the prompt are generalized to new inputs. This ability furthermore extends beyond standard language tasks, enabling few-shot learning for general patterns. In this work, we consider the application of in-context learning with pre-trained language models for dynamic manipulation. Dynamic manipulation introduces several crucial challenges, including increased dimensionality, complex dynamics, and partial observability. To address this, we take an iterative approach, and formulate our in-context learning problem to predict adjustments to a parametric policy based on previous interactions. We show across several tasks in simulation and on a physical robot that utilizing in-context learning outperforms alternative methods in the low data regime. Video summary of this work and experiments can be found https://youtu.be/2inxpdrq74U?si=dAdDYsUEr25nZvRn. △ Less

Submitted 20 August, 2025; originally announced August 2025.

Comments: 14 pages. Accepted at CoRL 2025

SRMA-Mamba: Spatial Reverse Mamba Attention Network for Pathological Liver Segmentation in MRI Volumes

Authors: Jun Zeng, Quoc-Huy Trinh, Deepak Ranjan Nayak, Nikhil Kumar Tomar, Ulas Bagci, Debesh Jha

Abstract: Liver cirrhosis plays a critical role in the prognosis of chronic liver disease. Early detection and timely intervention are essential for reducing mortality rates. However, the intricate anatomical architecture and diverse pathological changes of liver tissue complicate the accurate detection and characterization of pathological liver structures in clinical settings. Existing methods underutilize… ▽ More Liver cirrhosis plays a critical role in the prognosis of chronic liver disease. Early detection and timely intervention are essential for reducing mortality rates. However, the intricate anatomical architecture and diverse pathological changes of liver tissue complicate the accurate detection and characterization of pathological liver structures in clinical settings. Existing methods underutilize spatial anatomical details in volumetric MRI data, thereby hindering their clinical effectiveness and explainability. To address this challenge, we introduce a novel Mamba-based network, SRMA-Mamba, designed to model the spatial relationships within complex anatomical structures of MRI volumes. By integrating the Spatial Anatomy-Based Mamba module (SABMamba), SRMA-Mamba performs selective Mamba scans within pathological liver tissues and combines anatomical information from the sagittal, coronal, and axial planes to construct a global spatial context representation, enabling efficient volumetric segmentation of pathological liver structures. Furthermore, we introduce the Spatial Reverse Mamba Attention module (SRMA), designed to progressively refine boundary details in the segmentation map, utilizing both the coarse segmentation map and hierarchical encoding features. Extensive experiments demonstrate that SRMA-Mamba surpasses state-of-the-art methods, delivering exceptional performance in 3D pathological liver segmentation. The source code is available at https://github.com/JunZengz/SRMA-Mamba. △ Less

Submitted 26 June, 2026; v1 submitted 17 August, 2025; originally announced August 2025.

Comments: 10 pages, 4 figures

Large Language Model Evaluated Stand-alone Attention-Assisted Graph Neural Network with Spatial and Structural Information Interaction for Precise Endoscopic Image Segmentation

Authors: Juntong Fan, Shuyi Fan, Debesh Jha, Changsheng Fang, Tieyong Zeng, Hengyong Yu, Dayang Wang

Abstract: Accurate endoscopic image segmentation on the polyps is critical for early colorectal cancer detection. However, this task remains challenging due to low contrast with surrounding mucosa, specular highlights, and indistinct boundaries. To address these challenges, we propose FOCUS-Med, which stands for Fusion of spatial and structural graph with attentional context-aware polyp segmentation in endo… ▽ More Accurate endoscopic image segmentation on the polyps is critical for early colorectal cancer detection. However, this task remains challenging due to low contrast with surrounding mucosa, specular highlights, and indistinct boundaries. To address these challenges, we propose FOCUS-Med, which stands for Fusion of spatial and structural graph with attentional context-aware polyp segmentation in endoscopic medical imaging. FOCUS-Med integrates a Dual Graph Convolutional Network (Dual-GCN) module to capture contextual spatial and topological structural dependencies. This graph-based representation enables the model to better distinguish polyps from background tissues by leveraging topological cues and spatial connectivity, which are often obscured in raw image intensities. It enhances the model's ability to preserve boundaries and delineate complex shapes typical of polyps. In addition, a location-fused stand-alone self-attention is employed to strengthen global context integration. To bridge the semantic gap between encoder-decoder layers, we incorporate a trainable weighted fast normalized fusion strategy for efficient multi-scale aggregation. Notably, we are the first to introduce the use of a Large Language Model (LLM) to provide detailed qualitative evaluations of segmentation quality. Extensive experiments on public benchmarks demonstrate that FOCUS-Med achieves state-of-the-art performance across five key metrics, underscoring its effectiveness and clinical potential for AI-assisted colonoscopy. △ Less

Submitted 9 August, 2025; originally announced August 2025.

Comments: Manuscript under review

Learning Pivoting Manipulation with Force and Vision Feedback Using Optimization-based Demonstrations

Authors: Yuki Shirai, Kei Ota, Devesh K. Jha, Diego Romeres

Abstract: Non-prehensile manipulation is challenging due to complex contact interactions between objects, the environment, and robots. Model-based approaches can efficiently generate complex trajectories of robots and objects under contact constraints. However, they tend to be sensitive to model inaccuracies and require access to privileged information (e.g., object mass, size, pose), making them less suita… ▽ More Non-prehensile manipulation is challenging due to complex contact interactions between objects, the environment, and robots. Model-based approaches can efficiently generate complex trajectories of robots and objects under contact constraints. However, they tend to be sensitive to model inaccuracies and require access to privileged information (e.g., object mass, size, pose), making them less suitable for novel objects. In contrast, learning-based approaches are typically more robust to modeling errors but require large amounts of data. In this paper, we bridge these two approaches to propose a framework for learning closed-loop pivoting manipulation. By leveraging computationally efficient Contact-Implicit Trajectory Optimization (CITO), we design demonstration-guided deep Reinforcement Learning (RL), leading to sample-efficient learning. We also present a sim-to-real transfer approach using a privileged training strategy, enabling the robot to perform pivoting manipulation using only proprioception, vision, and force sensing without access to privileged information. Our method is evaluated on several pivoting tasks, demonstrating that it can successfully perform sim-to-real transfer. The overview of our method and the hardware experiments are shown at https://youtu.be/akjGDgfwLbM?si=QVw6ExoPy2VsU2g6 △ Less

Submitted 5 August, 2025; v1 submitted 1 August, 2025; originally announced August 2025.

Mamba Guided Boundary Prior Matters: A New Perspective for Generalized Polyp Segmentation

Authors: Tapas K. Dutta, Snehashis Majhi, Deepak Ranjan Nayak, Debesh Jha

Abstract: Polyp segmentation in colonoscopy images is crucial for early detection and diagnosis of colorectal cancer. However, this task remains a significant challenge due to the substantial variations in polyp shape, size, and color, as well as the high similarity between polyps and surrounding tissues, often compounded by indistinct boundaries. While existing encoder-decoder CNN and transformer-based app… ▽ More Polyp segmentation in colonoscopy images is crucial for early detection and diagnosis of colorectal cancer. However, this task remains a significant challenge due to the substantial variations in polyp shape, size, and color, as well as the high similarity between polyps and surrounding tissues, often compounded by indistinct boundaries. While existing encoder-decoder CNN and transformer-based approaches have shown promising results, they struggle with stable segmentation performance on polyps with weak or blurry boundaries. These methods exhibit limited abilities to distinguish between polyps and non-polyps and capture essential boundary cues. Moreover, their generalizability still falls short of meeting the demands of real-time clinical applications. To address these limitations, we propose SAM-MaGuP, a groundbreaking approach for robust polyp segmentation. By incorporating a boundary distillation module and a 1D-2D Mamba adapter within the Segment Anything Model (SAM), SAM-MaGuP excels at resolving weak boundary challenges and amplifies feature learning through enriched global contextual interactions. Extensive evaluations across five diverse datasets reveal that SAM-MaGuP outperforms state-of-the-art methods, achieving unmatched segmentation accuracy and robustness. Our key innovations, a Mamba-guided boundary prior and a 1D-2D Mamba block, set a new benchmark in the field, pushing the boundaries of polyp segmentation to new heights. △ Less

Submitted 2 July, 2025; originally announced July 2025.

Comments: 11 pages, 2 figures, MICCAI-2025

Find the Fruit: Zero-Shot Sim2Real RL for Occlusion-Aware Plant Manipulation

Authors: Nitesh Subedi, Hsin-Jung Yang, Devesh K. Jha, Soumik Sarkar

Abstract: Autonomous harvesting in the open presents a complex manipulation problem. In most scenarios, an autonomous system has to deal with significant occlusion and require interaction in the presence of large structural uncertainties (every plant is different). Perceptual and modeling uncertainty make design of reliable manipulation controllers for harvesting challenging, resulting in poor performance d… ▽ More Autonomous harvesting in the open presents a complex manipulation problem. In most scenarios, an autonomous system has to deal with significant occlusion and require interaction in the presence of large structural uncertainties (every plant is different). Perceptual and modeling uncertainty make design of reliable manipulation controllers for harvesting challenging, resulting in poor performance during deployment. We present a sim2real reinforcement learning (RL) framework for occlusion-aware plant manipulation, where a policy is learned entirely in simulation to reposition stems and leaves to reveal target fruit(s). In our proposed approach, we decouple high-level kinematic planning from low-level compliant control which simplifies the sim2real transfer. This decomposition allows the learned policy to generalize across multiple plants with different stiffness and morphology. In experiments with multiple real-world plant setups, our system achieves up to 86.7% success in exposing target fruits, demonstrating robustness to occlusion variation and structural uncertainty. △ Less

Submitted 23 February, 2026; v1 submitted 22 May, 2025; originally announced May 2025.

PRS-Med: Position Reasoning Segmentation in Medical Imaging

Authors: Quoc-Huy Trinh, Minh-Van Nguyen, Jun Zeng, Debesh Jha, Ulas Bagci

Abstract: Prompt-based medical image segmentation has rapidly emerged, yet existing methods rely on explicit prompts like bounding boxes and struggle to reason about the spatial relationships essential for clinical diagnosis. While general-domain models attempt complex coordinate regression, these approaches often lack the structured reliability required for medical applications. In this work, we introduce… ▽ More Prompt-based medical image segmentation has rapidly emerged, yet existing methods rely on explicit prompts like bounding boxes and struggle to reason about the spatial relationships essential for clinical diagnosis. While general-domain models attempt complex coordinate regression, these approaches often lack the structured reliability required for medical applications. In this work, we introduce PRS-Med, a unified framework that adopts an elegant, clinical-first approach to position reasoning segmentation. By utilizing a medical vision-language model integrated with a segmentation decoder, PRS-Med mimics the structured "search patterns" used by radiologists to identify pathologies within specific anatomical zones. To support this robust reasoning, we present the Medical Position Reasoning Segmentation (PosMed) dataset, comprising 116,000 expert-validated, spatially grounded question-answer pairs across six imaging modalities. Unlike previous brittle attempts at spatial reasoning, PosMed leverages a scalable, deterministic pipeline validated by board-certified radiologists to ensure clinical accuracy. Extensive experiments demonstrate that our zone-based reasoning not only improves segmentation accuracy (mean Dice improvements up to +31.2\%) but also provides a high-confidence interpretability layer that outperforms state-of-the-art complex reasoning models. By prioritizing functional reliability over unnecessary technical complexity, PRS-Med offers a practical and scalable baseline for the next generation of intelligent medical assistants. △ Less

Submitted 31 March, 2026; v1 submitted 17 May, 2025; originally announced May 2025.

Benchmarking of CPU-intensive Stream Data Processing in The Edge Computing Systems

Authors: Tomasz Szydlo, Viacheslav Horbanov, Devki Nandan Jha, Shashikant Ilager, Aleksander Slominski, Rajiv Ranjan

Abstract: Edge computing has emerged as a pivotal technology, offering significant advantages such as low latency, enhanced data security, and reduced reliance on centralized cloud infrastructure. These benefits are crucial for applications requiring real-time data processing or strict security measures. Despite these advantages, edge devices operating within edge clusters are often underutilized. This inef… ▽ More Edge computing has emerged as a pivotal technology, offering significant advantages such as low latency, enhanced data security, and reduced reliance on centralized cloud infrastructure. These benefits are crucial for applications requiring real-time data processing or strict security measures. Despite these advantages, edge devices operating within edge clusters are often underutilized. This inefficiency is mainly due to the absence of a holistic performance profiling mechanism which can help dynamically adjust the desired system configuration for a given workload. Since edge computing environments involve a complex interplay between CPU frequency, power consumption, and application performance, a deeper understanding of these correlations is essential. By uncovering these relationships, it becomes possible to make informed decisions that enhance both computational efficiency and energy savings. To address this gap, this paper evaluates the power consumption and performance characteristics of a single processing node within an edge cluster using a synthetic microbenchmark by varying the workload size and CPU frequency. The results show how an optimal measure can lead to optimized usage of edge resources, given both performance and power consumption. △ Less

Submitted 23 February, 2026; v1 submitted 12 May, 2025; originally announced May 2025.

Modality Selection and Skill Segmentation via Cross-Modality Attention

Authors: Jiawei Jiang, Kei Ota, Devesh K. Jha, Asako Kanezaki

Abstract: Incorporating additional sensory modalities such as tactile and audio into foundational robotic models poses significant challenges due to the curse of dimensionality. This work addresses this issue through modality selection. We propose a cross-modality attention (CMA) mechanism to identify and selectively utilize the modalities that are most informative for action generation at each timestep. Fu… ▽ More Incorporating additional sensory modalities such as tactile and audio into foundational robotic models poses significant challenges due to the curse of dimensionality. This work addresses this issue through modality selection. We propose a cross-modality attention (CMA) mechanism to identify and selectively utilize the modalities that are most informative for action generation at each timestep. Furthermore, we extend the application of CMA to segment primitive skills from expert demonstrations and leverage this segmentation to train a hierarchical policy capable of solving long-horizon, contact-rich manipulation tasks. △ Less

Submitted 20 April, 2025; originally announced April 2025.

FocusNet: Transformer-enhanced Polyp Segmentation with Local and Pooling Attention

Authors: Jun Zeng, KC Santosh, Deepak Rajan Nayak, Thomas de Lange, Jonas Varkey, Tyler Berzin, Debesh Jha

Abstract: Colonoscopy is vital in the early diagnosis of colorectal polyps. Regular screenings can effectively prevent benign polyps from progressing to CRC. While deep learning has made impressive strides in polyp segmentation, most existing models are trained on single-modality and single-center data, making them less effective in real-world clinical environments. To overcome these limitations, we propose… ▽ More Colonoscopy is vital in the early diagnosis of colorectal polyps. Regular screenings can effectively prevent benign polyps from progressing to CRC. While deep learning has made impressive strides in polyp segmentation, most existing models are trained on single-modality and single-center data, making them less effective in real-world clinical environments. To overcome these limitations, we propose FocusNet, a Transformer-enhanced focus attention network designed to improve polyp segmentation. FocusNet incorporates three essential modules: the Cross-semantic Interaction Decoder Module (CIDM) for generating coarse segmentation maps, the Detail Enhancement Module (DEM) for refining shallow features, and the Focus Attention Module (FAM), to balance local detail and global context through local and pooling attention mechanisms. We evaluate our model on PolypDB, a newly introduced dataset with multi-modality and multi-center data for building more reliable segmentation methods. Extensive experiments showed that FocusNet consistently outperforms existing state-of-the-art approaches with a high dice coefficients of 82.47% on the BLI modality, 88.46% on FICE, 92.04% on LCI, 82.09% on the NBI and 93.42% on WLI modality, demonstrating its accuracy and robustness across five different modalities. The source code for FocusNet is available at https://github.com/JunZengz/FocusNet. △ Less

Submitted 18 April, 2025; originally announced April 2025.

Comments: 9 pages, 6 figures

Hierarchical Contact-Rich Trajectory Optimization for Multi-Modal Manipulation using Tight Convex Relaxations

Authors: Yuki Shirai, Arvind Raghunathan, Devesh K. Jha

Abstract: Designing trajectories for manipulation through contact is challenging as it requires reasoning of object \& robot trajectories as well as complex contact sequences simultaneously. In this paper, we present a novel framework for simultaneously designing trajectories of robots, objects, and contacts efficiently for contact-rich manipulation. We propose a hierarchical optimization framework where Mi… ▽ More Designing trajectories for manipulation through contact is challenging as it requires reasoning of object \& robot trajectories as well as complex contact sequences simultaneously. In this paper, we present a novel framework for simultaneously designing trajectories of robots, objects, and contacts efficiently for contact-rich manipulation. We propose a hierarchical optimization framework where Mixed-Integer Linear Program (MILP) selects optimal contacts between robot \& object using approximate dynamical constraints, and then a NonLinear Program (NLP) optimizes trajectory of the robot(s) and object considering full nonlinear constraints. We present a convex relaxation of bilinear constraints using binary encoding technique such that MILP can provide tighter solutions with better computational complexity. The proposed framework is evaluated on various manipulation tasks where it can reason about complex multi-contact interactions while providing computational advantages. We also demonstrate our framework in hardware experiments using a bimanual robot system. The video summarizing this paper and hardware experiments is found https://youtu.be/s2S1Eg5RsRE?si=chPkftz_a3NAHxLq △ Less

Submitted 11 March, 2025; v1 submitted 10 March, 2025; originally announced March 2025.

Comments: 2025 IEEE International Conference on Robotics and Automation (2025 ICRA)

A Reverse Mamba Attention Network for Pathological Liver Segmentation

Authors: Jun Zeng, Debesh Jha, Ertugrul Aktas, Elif Keles, Alpay Medetalibeyoglu, Matthew Antalek, Robert Lewandowski, Daniela Ladner, Amir A. Borhani, Gorkem Durak, Ulas Bagci

Abstract: We present RMA-Mamba, a novel architecture that advances the capabilities of vision state space models through a specialized reverse mamba attention module (RMA). The key innovation lies in RMA-Mamba's ability to capture long-range dependencies while maintaining precise local feature representation through its hierarchical processing pipeline. By integrating Vision Mamba (VMamba)'s efficient seque… ▽ More We present RMA-Mamba, a novel architecture that advances the capabilities of vision state space models through a specialized reverse mamba attention module (RMA). The key innovation lies in RMA-Mamba's ability to capture long-range dependencies while maintaining precise local feature representation through its hierarchical processing pipeline. By integrating Vision Mamba (VMamba)'s efficient sequence modeling with RMA's targeted feature refinement, our architecture achieves superior feature learning across multiple scales. This dual-mechanism approach enables robust handling of complex morphological patterns while maintaining computational efficiency. We demonstrate RMA-Mamba's effectiveness in the challenging domain of pathological liver segmentation (from both CT and MRI), where traditional segmentation approaches often fail due to tissue variations. When evaluated on a newly introduced cirrhotic liver dataset (CirrMRI600+) of T2-weighted MRI scans, RMA-Mamba achieves the state-of-the-art performance with a Dice coefficient of 92.08%, mean IoU of 87.36%, and recall of 92.96%. The architecture's generalizability is further validated on the cancerous liver segmentation from CT scans (LiTS: Liver Tumor Segmentation dataset), yielding a Dice score of 92.9% and mIoU of 88.99%. Our code is available for public: https://github.com/JunZengz/RMAMamba. △ Less

Submitted 5 March, 2025; v1 submitted 23 February, 2025; originally announced February 2025.

Comments: 8 pages, 3 figures

Liver Cirrhosis Stage Estimation from MRI with Deep Learning

Authors: Jun Zeng, Debesh Jha, Ertugrul Aktas, Elif Keles, Alpay Medetalibeyoglu, Matthew Antalek, Federica Proietto Salanitri, Amir A. Borhani, Daniela P. Ladner, Gorkem Durak, Ulas Bagci

Abstract: We present an end-to-end deep learning framework for automated liver cirrhosis stage estimation from multi-sequence MRI. Cirrhosis is the severe scarring (fibrosis) of the liver and a common endpoint of various chronic liver diseases. Early diagnosis is vital to prevent complications such as decompensation and cancer, which significantly decreases life expectancy. However, diagnosing cirrhosis in… ▽ More We present an end-to-end deep learning framework for automated liver cirrhosis stage estimation from multi-sequence MRI. Cirrhosis is the severe scarring (fibrosis) of the liver and a common endpoint of various chronic liver diseases. Early diagnosis is vital to prevent complications such as decompensation and cancer, which significantly decreases life expectancy. However, diagnosing cirrhosis in its early stages is challenging, and patients often present with life-threatening complications. Our approach integrates multi-scale feature learning with sequence-specific attention mechanisms to capture subtle tissue variations across cirrhosis progression stages. Using CirrMRI600+, a large-scale publicly available dataset of 628 high-resolution MRI scans from 339 patients, we demonstrate state-of-the-art performance in three-stage cirrhosis classification. Our best model achieves 72.8% accuracy on T1W and 63.8% on T2W sequences, significantly outperforming traditional radiomics-based approaches. Through extensive ablation studies, we show that our architecture effectively learns stage-specific imaging biomarkers. We establish new benchmarks for automated cirrhosis staging and provide insights for developing clinically applicable deep learning systems. The source code will be available at https://github.com/JunZengz/CirrhosisStage. △ Less

Submitted 22 May, 2025; v1 submitted 23 February, 2025; originally announced February 2025.

Comments: 7 pages, 1 figure

Diverse Image Generation with Diffusion Models and Cross Class Label Learning for Polyp Classification

Authors: Vanshali Sharma, Debesh Jha, M. K. Bhuyan, Pradip K. Das, Ulas Bagci

Abstract: Pathologic diagnosis is a critical phase in deciding the optimal treatment procedure for dealing with colorectal cancer (CRC). Colonic polyps, precursors to CRC, can pathologically be classified into two major types: adenomatous and hyperplastic. For precise classification and early diagnosis of such polyps, the medical procedure of colonoscopy has been widely adopted paired with various imaging t… ▽ More Pathologic diagnosis is a critical phase in deciding the optimal treatment procedure for dealing with colorectal cancer (CRC). Colonic polyps, precursors to CRC, can pathologically be classified into two major types: adenomatous and hyperplastic. For precise classification and early diagnosis of such polyps, the medical procedure of colonoscopy has been widely adopted paired with various imaging techniques, including narrow band imaging and white light imaging. However, the existing classification techniques mainly rely on a single imaging modality and show limited performance due to data scarcity. Recently, generative artificial intelligence has been gaining prominence in overcoming such issues. Additionally, various generation-controlling mechanisms using text prompts and images have been introduced to obtain visually appealing and desired outcomes. However, such mechanisms require class labels to make the model respond efficiently to the provided control input. In the colonoscopy domain, such controlling mechanisms are rarely explored; specifically, the text prompt is a completely uninvestigated area. Moreover, the unavailability of expensive class-wise labels for diverse sets of images limits such explorations. Therefore, we develop a novel model, PathoPolyp-Diff, that generates text-controlled synthetic images with diverse characteristics in terms of pathology, imaging modalities, and quality. We introduce cross-class label learning to make the model learn features from other classes, reducing the burdensome task of data annotation. The experimental results report an improvement of up to 7.91% in balanced accuracy using a publicly available dataset. Moreover, cross-class label learning achieves a statistically significant improvement of up to 18.33% in balanced accuracy during video-level analysis. The code is available at https://github.com/Vanshali/PathoPolyp-Diff. △ Less

Submitted 7 February, 2025; originally announced February 2025.

L2GNet: Optimal Local-to-Global Representation of Anatomical Structures for Generalized Medical Image Segmentation

Authors: Vandan Gorade, Sparsh Mittal, Neethi Dasu, Rekha Singhal, KC Santosh, Debesh Jha

Abstract: Continuous Latent Space (CLS) and Discrete Latent Space (DLS) models, like AttnUNet and VQUNet, have excelled in medical image segmentation. In contrast, Synergistic Continuous and Discrete Latent Space (CDLS) models show promise in handling fine and coarse-grained information. However, they struggle with modeling long-range dependencies. CLS or CDLS-based models, such as TransUNet or SynergyNet a… ▽ More Continuous Latent Space (CLS) and Discrete Latent Space (DLS) models, like AttnUNet and VQUNet, have excelled in medical image segmentation. In contrast, Synergistic Continuous and Discrete Latent Space (CDLS) models show promise in handling fine and coarse-grained information. However, they struggle with modeling long-range dependencies. CLS or CDLS-based models, such as TransUNet or SynergyNet are adept at capturing long-range dependencies. Since they rely heavily on feature pooling or aggregation using self-attention, they may capture dependencies among redundant regions. This hinders comprehension of anatomical structure content, poses challenges in modeling intra-class and inter-class dependencies, increases false negatives and compromises generalization. Addressing these issues, we propose L2GNet, which learns global dependencies by relating discrete codes obtained from DLS using optimal transport and aligning codes on a trainable reference. L2GNet achieves discriminative on-the-fly representation learning without an additional weight matrix in self-attention models, making it computationally efficient for medical applications. Extensive experiments on multi-organ segmentation and cardiac datasets demonstrate L2GNet's superiority over state-of-the-art methods, including the CDLS method SynergyNet, offering an novel approach to enhance deep learning models' performance in medical image analysis. △ Less

Submitted 6 February, 2025; originally announced February 2025.

FDPP: Fine-tune Diffusion Policy with Human Preference

Authors: Yuxin Chen, Devesh K. Jha, Masayoshi Tomizuka, Diego Romeres

Abstract: Imitation learning from human demonstrations enables robots to perform complex manipulation tasks and has recently witnessed huge success. However, these techniques often struggle to adapt behavior to new preferences or changes in the environment. To address these limitations, we propose Fine-tuning Diffusion Policy with Human Preference (FDPP). FDPP learns a reward function through preference-bas… ▽ More Imitation learning from human demonstrations enables robots to perform complex manipulation tasks and has recently witnessed huge success. However, these techniques often struggle to adapt behavior to new preferences or changes in the environment. To address these limitations, we propose Fine-tuning Diffusion Policy with Human Preference (FDPP). FDPP learns a reward function through preference-based learning. This reward is then used to fine-tune the pre-trained policy with reinforcement learning (RL), resulting in alignment of pre-trained policy with new human preferences while still solving the original task. Our experiments across various robotic tasks and preferences demonstrate that FDPP effectively customizes policy behavior without compromising performance. Additionally, we show that incorporating Kullback-Leibler (KL) regularization during fine-tuning prevents over-fitting and helps maintain the competencies of the initial policy. △ Less

Submitted 14 January, 2025; originally announced January 2025.

Security by Design Issues in Autonomous Vehicles

Authors: Martin Higgins, Devki Jha, David Blundell, David Wallom

Abstract: As autonomous vehicle (AV) technology advances towards maturity, it becomes imperative to examine the security vulnerabilities within these cyber-physical systems. While conventional cyber-security concerns are often at the forefront of discussions, it is essential to get deeper into the various layers of vulnerability that are often overlooked within mainstream frameworks. Our goal is to spotligh… ▽ More As autonomous vehicle (AV) technology advances towards maturity, it becomes imperative to examine the security vulnerabilities within these cyber-physical systems. While conventional cyber-security concerns are often at the forefront of discussions, it is essential to get deeper into the various layers of vulnerability that are often overlooked within mainstream frameworks. Our goal is to spotlight imminent challenges faced by AV operators and explore emerging technologies for comprehensive solutions. This research outlines the diverse security layers, spanning physical, cyber, coding, and communication aspects, in the context of AVs. Furthermore, we provide insights into potential solutions for each potential attack vector, ensuring that autonomous vehicles remain secure and resilient in an evolving threat landscape. △ Less

Submitted 7 January, 2025; originally announced January 2025.

SAM-Mamba: Mamba Guided SAM Architecture for Generalized Zero-Shot Polyp Segmentation

Authors: Tapas Kumar Dutta, Snehashis Majhi, Deepak Ranjan Nayak, Debesh Jha

Abstract: Polyp segmentation in colonoscopy is crucial for detecting colorectal cancer. However, it is challenging due to variations in the structure, color, and size of polyps, as well as the lack of clear boundaries with surrounding tissues. Traditional segmentation models based on Convolutional Neural Networks (CNNs) struggle to capture detailed patterns and global context, limiting their performance. Vi… ▽ More Polyp segmentation in colonoscopy is crucial for detecting colorectal cancer. However, it is challenging due to variations in the structure, color, and size of polyps, as well as the lack of clear boundaries with surrounding tissues. Traditional segmentation models based on Convolutional Neural Networks (CNNs) struggle to capture detailed patterns and global context, limiting their performance. Vision Transformer (ViT)-based models address some of these issues but have difficulties in capturing local context and lack strong zero-shot generalization. To this end, we propose the Mamba-guided Segment Anything Model (SAM-Mamba) for efficient polyp segmentation. Our approach introduces a Mamba-Prior module in the encoder to bridge the gap between the general pre-trained representation of SAM and polyp-relevant trivial clues. It injects salient cues of polyp images into the SAM image encoder as a domain prior while capturing global dependencies at various scales, leading to more accurate segmentation results. Extensive experiments on five benchmark datasets show that SAM-Mamba outperforms traditional CNN, ViT, and Adapter-based models in both quantitative and qualitative measures. Additionally, SAM-Mamba demonstrates excellent adaptability to unseen datasets, making it highly suitable for real-time clinical use. △ Less

Submitted 11 December, 2024; originally announced December 2024.

Large Scale MRI Collection and Segmentation of Cirrhotic Liver

Authors: Debesh Jha, Onkar Kishor Susladkar, Vandan Gorade, Elif Keles, Matthew Antalek, Deniz Seyithanoglu, Timurhan Cebeci, Halil Ertugrul Aktas, Gulbiz Dagoglu Kartal, Sabahattin Kaymakoglu, Sukru Mehmet Erturk, Yuri Velichko, Daniela Ladner, Amir A. Borhani, Alpay Medetalibeyoglu, Gorkem Durak, Ulas Bagci

Abstract: Liver cirrhosis represents the end stage of chronic liver disease, characterized by extensive fibrosis and nodular regeneration that significantly increases mortality risk. While magnetic resonance imaging (MRI) offers a non-invasive assessment, accurately segmenting cirrhotic livers presents substantial challenges due to morphological alterations and heterogeneous signal characteristics. Deep lea… ▽ More Liver cirrhosis represents the end stage of chronic liver disease, characterized by extensive fibrosis and nodular regeneration that significantly increases mortality risk. While magnetic resonance imaging (MRI) offers a non-invasive assessment, accurately segmenting cirrhotic livers presents substantial challenges due to morphological alterations and heterogeneous signal characteristics. Deep learning approaches show promise for automating these tasks, but progress has been limited by the absence of large-scale, annotated datasets. Here, we present CirrMRI600+, the first comprehensive dataset comprising 628 high-resolution abdominal MRI scans (310 T1-weighted and 318 T2-weighted sequences, totaling nearly 40,000 annotated slices) with expert-validated segmentation labels for cirrhotic livers. The dataset includes demographic information, clinical parameters, and histopathological validation where available. Additionally, we provide benchmark results from 11 state-of-the-art deep learning experiments to establish performance standards. CirrMRI600+ enables the development and validation of advanced computational methods for cirrhotic liver analysis, potentially accelerating progress toward automated Cirrhosis visual staging and personalized treatment planning. △ Less

Submitted 7 May, 2025; v1 submitted 6 October, 2024; originally announced October 2024.

RecoveryChaining: Learning Local Recovery Policies for Robust Manipulation

Authors: Shivam Vats, Devesh K. Jha, Maxim Likhachev, Oliver Kroemer, Diego Romeres

Abstract: Model-based planners and controllers are commonly used to solve complex manipulation problems as they can efficiently optimize diverse objectives and generalize to long horizon tasks. However, they often fail during deployment due to noisy actuation, partial observability and imperfect models. To enable a robot to recover from such failures, we propose to use hierarchical reinforcement learning to… ▽ More Model-based planners and controllers are commonly used to solve complex manipulation problems as they can efficiently optimize diverse objectives and generalize to long horizon tasks. However, they often fail during deployment due to noisy actuation, partial observability and imperfect models. To enable a robot to recover from such failures, we propose to use hierarchical reinforcement learning to learn a recovery policy. The recovery policy is triggered when a failure is detected based on sensory observations and seeks to take the robot to a state from which it can complete the task using the nominal model-based controllers. Our approach, called RecoveryChaining, uses a hybrid action space, where the model-based controllers are provided as additional \emph{nominal} options which allows the recovery policy to decide how to recover, when to switch to a nominal controller and which controller to switch to even with \emph{sparse rewards}. We evaluate our approach in three multi-step manipulation tasks with sparse rewards, where it learns significantly more robust recovery policies than those learned by baselines. We successfully transfer recovery policies learned in simulation to a physical robot to demonstrate the feasibility of sim-to-real transfer with our method. △ Less

Submitted 7 March, 2025; v1 submitted 17 October, 2024; originally announced October 2024.

Comments: Added Lazy RecoveryChaining algorithm. 8 pages, 9 figures

Transformer-Enhanced Iterative Feedback Mechanism for Polyp Segmentation

Authors: Nikhil Kumar Tomar, Debesh Jha, Koushik Biswas, Tyler M. Berzin, Rajesh Keswani, Michael Wallace, Ulas Bagci

Abstract: Colorectal cancer (CRC) is the third most common cause of cancer diagnosed in the United States and the second leading cause of cancer-related death among both genders. Notably, CRC is the leading cause of cancer in younger men less than 50 years old. Colonoscopy is considered the gold standard for the early diagnosis of CRC. Skills vary significantly among endoscopists, and a high miss rate is re… ▽ More Colorectal cancer (CRC) is the third most common cause of cancer diagnosed in the United States and the second leading cause of cancer-related death among both genders. Notably, CRC is the leading cause of cancer in younger men less than 50 years old. Colonoscopy is considered the gold standard for the early diagnosis of CRC. Skills vary significantly among endoscopists, and a high miss rate is reported. Automated polyp segmentation can reduce the missed rates, and timely treatment is possible in the early stage. To address this challenge, we introduce \textit{\textbf{\ac{FANetv2}}}, an advanced encoder-decoder network designed to accurately segment polyps from colonoscopy images. Leveraging an initial input mask generated by Otsu thresholding, FANetv2 iteratively refines its binary segmentation masks through a novel feedback attention mechanism informed by the mask predictions of previous epochs. Additionally, it employs a text-guided approach that integrates essential information about the number (one or many) and size (small, medium, large) of polyps to further enhance its feature representation capabilities. This dual-task approach facilitates accurate polyp segmentation and aids in the auxiliary classification of polyp attributes, significantly boosting the model's performance. Our comprehensive evaluations on the publicly available BKAI-IGH and CVC-ClinicDB datasets demonstrate the superior performance of FANetv2, evidenced by high dice similarity coefficients (DSC) of 0.9186 and 0.9481, along with low Hausdorff distances of 2.83 and 3.19, respectively. The source code for FANetv2 is available at https://github.com/xxxxx/FANetv2. △ Less

Submitted 24 August, 2024; originally announced September 2024.

PolypDB: A Curated Multi-Center Dataset for Development of AI Algorithms in Colonoscopy

Authors: Debesh Jha, Nikhil Kumar Tomar, Vanshali Sharma, Quoc-Huy Trinh, Koushik Biswas, Hongyi Pan, Ritika K. Jha, Gorkem Durak, Alexander Hann, Jonas Varkey, Hang Viet Dao, Long Van Dao, Binh Phuc Nguyen, Nikolaos Papachrysos, Brandon Rieders, Peter Thelin Schmidt, Enrik Geissler, Tyler Berzin, Pål Halvorsen, Michael A. Riegler, Thomas de Lange, Ulas Bagci

Abstract: Colonoscopy is the primary method for examination, detection, and removal of polyps. However, challenges such as variations among the endoscopists' skills, bowel quality preparation, and the complex nature of the large intestine contribute to high polyp miss-rate. These missed polyps can develop into cancer later, underscoring the importance of improving the detection methods. To address this gap… ▽ More Colonoscopy is the primary method for examination, detection, and removal of polyps. However, challenges such as variations among the endoscopists' skills, bowel quality preparation, and the complex nature of the large intestine contribute to high polyp miss-rate. These missed polyps can develop into cancer later, underscoring the importance of improving the detection methods. To address this gap of lack of publicly available, multi-center large and diverse datasets for developing automatic methods for polyp detection and segmentation, we introduce PolypDB, a large scale publicly available dataset that contains 3934 still polyp images and their corresponding ground truth from real colonoscopy videos. PolypDB comprises images from five modalities: Blue Light Imaging (BLI), Flexible Imaging Color Enhancement (FICE), Linked Color Imaging (LCI), Narrow Band Imaging (NBI), and White Light Imaging (WLI) from three medical centers in Norway, Sweden, and Vietnam. We provide a benchmark on each modality and center, including federated learning settings using popular segmentation and detection benchmarks. PolypDB is public and can be downloaded at \url{https://osf.io/pr7ms/}. More information about the dataset, segmentation, detection, federated learning benchmark and train-test split can be found at \url{https://github.com/DebeshJha/PolypDB}. △ Less

Submitted 3 January, 2025; v1 submitted 19 August, 2024; originally announced September 2024.

Comments: 3 Figures, 6 tables

Classification of Endoscopy and Video Capsule Images using CNN-Transformer Model

Authors: Aliza Subedi, Smriti Regmi, Nisha Regmi, Bhumi Bhusal, Ulas Bagci, Debesh Jha

Abstract: Gastrointestinal cancer is a leading cause of cancer-related incidence and death, making it crucial to develop novel computer-aided diagnosis systems for early detection and enhanced treatment. Traditional approaches rely on the expertise of gastroenterologists to identify diseases; however, this process is subjective, and interpretation can vary even among expert clinicians. Considering recent ad… ▽ More Gastrointestinal cancer is a leading cause of cancer-related incidence and death, making it crucial to develop novel computer-aided diagnosis systems for early detection and enhanced treatment. Traditional approaches rely on the expertise of gastroenterologists to identify diseases; however, this process is subjective, and interpretation can vary even among expert clinicians. Considering recent advancements in classifying gastrointestinal anomalies and landmarks in endoscopic and video capsule endoscopy images, this study proposes a hybrid model that combines the advantages of Transformers and Convolutional Neural Networks (CNNs) to enhance classification performance. Our model utilizes DenseNet201 as a CNN branch to extract local features and integrates a Swin Transformer branch for global feature understanding, combining both to perform the classification task. For the GastroVision dataset, our proposed model demonstrates excellent performance with Precision, Recall, F1 score, Accuracy, and Matthews Correlation Coefficient (MCC) of 0.8320, 0.8386, 0.8324, 0.8386, and 0.8191, respectively, showcasing its robustness against class imbalance and surpassing other CNNs as well as the Swin Transformer model. Similarly, for the Kvasir-Capsule, a large video capsule endoscopy dataset, our model outperforms all others, achieving overall Precision, Recall, F1 score, Accuracy, and MCC of 0.7007, 0.7239, 0.6900, 0.7239, and 0.3871. Moreover, we generated saliency maps to explain our model's focus areas, demonstrating its reliable decision-making process. The results underscore the potential of our hybrid CNN-Transformer model in aiding the early and accurate detection of gastrointestinal (GI) anomalies. △ Less

Submitted 20 August, 2024; originally announced August 2024.

A Novel Momentum-Based Deep Learning Techniques for Medical Image Classification and Segmentation

Authors: Koushik Biswas, Ridal Pal, Shaswat Patel, Debesh Jha, Meghana Karri, Amit Reza, Gorkem Durak, Alpay Medetalibeyoglu, Matthew Antalek, Yury Velichko, Daniela Ladner, Amir Borhani, Ulas Bagci

Abstract: Accurately segmenting different organs from medical images is a critical prerequisite for computer-assisted diagnosis and intervention planning. This study proposes a deep learning-based approach for segmenting various organs from CT and MRI scans and classifying diseases. Our study introduces a novel technique integrating momentum within residual blocks for enhanced training dynamics in medical i… ▽ More Accurately segmenting different organs from medical images is a critical prerequisite for computer-assisted diagnosis and intervention planning. This study proposes a deep learning-based approach for segmenting various organs from CT and MRI scans and classifying diseases. Our study introduces a novel technique integrating momentum within residual blocks for enhanced training dynamics in medical image analysis. We applied our method in two distinct tasks: segmenting liver, lung, & colon data and classifying abdominal pelvic CT and MRI scans. The proposed approach has shown promising results, outperforming state-of-the-art methods on publicly available benchmarking datasets. For instance, in the lung segmentation dataset, our approach yielded significant enhancements over the TransNetR model, including a 5.72% increase in dice score, a 5.04% improvement in mean Intersection over Union (mIoU), an 8.02% improvement in recall, and a 4.42% improvement in precision. Hence, incorporating momentum led to state-of-the-art performance in both segmentation and classification tasks, representing a significant advancement in the field of medical imaging. △ Less

Submitted 11 August, 2024; originally announced August 2024.

Comments: 8 pages

Towards Synergistic Deep Learning Models for Volumetric Cirrhotic Liver Segmentation in MRIs

Authors: Vandan Gorade, Onkar Susladkar, Gorkem Durak, Elif Keles, Ertugrul Aktas, Timurhan Cebeci, Alpay Medetalibeyoglu, Daniela Ladner, Debesh Jha, Ulas Bagci

Abstract: Liver cirrhosis, a leading cause of global mortality, requires precise segmentation of ROIs for effective disease monitoring and treatment planning. Existing segmentation models often fail to capture complex feature interactions and generalize across diverse datasets. To address these limitations, we propose a novel synergistic theory that leverages complementary latent spaces for enhanced feature… ▽ More Liver cirrhosis, a leading cause of global mortality, requires precise segmentation of ROIs for effective disease monitoring and treatment planning. Existing segmentation models often fail to capture complex feature interactions and generalize across diverse datasets. To address these limitations, we propose a novel synergistic theory that leverages complementary latent spaces for enhanced feature interaction modeling. Our proposed architecture, nnSynergyNet3D integrates continuous and discrete latent spaces for 3D volumes and features auto-configured training. This approach captures both fine-grained and coarse features, enabling effective modeling of intricate feature interactions. We empirically validated nnSynergyNet3D on a private dataset of 628 high-resolution T1 abdominal MRI scans from 339 patients. Our model outperformed the baseline nnUNet3D by approximately 2%. Additionally, zero-shot testing on healthy liver CT scans from the public LiTS dataset demonstrated superior cross-modal generalization capabilities. These results highlight the potential of synergistic latent space models to improve segmentation accuracy and robustness, thereby enhancing clinical workflows by ensuring consistency across CT and MRI modalities. △ Less

Submitted 8 August, 2024; originally announced August 2024.

Simultaneous Trajectory Optimization and Contact Selection for Contact-rich Manipulation with High-Fidelity Geometry

Authors: Mengchao Zhang, Devesh K. Jha, Arvind U. Raghunathan, Kris Hauser

Abstract: Contact-implicit trajectory optimization (CITO) is an effective method to plan complex trajectories for various contact-rich systems including manipulation and locomotion. CITO formulates a mathematical program with complementarity constraints (MPCC) that enforces that contact forces must be zero when points are not in contact. However, MPCC solve times increase steeply with the number of allowabl… ▽ More Contact-implicit trajectory optimization (CITO) is an effective method to plan complex trajectories for various contact-rich systems including manipulation and locomotion. CITO formulates a mathematical program with complementarity constraints (MPCC) that enforces that contact forces must be zero when points are not in contact. However, MPCC solve times increase steeply with the number of allowable points of contact, which limits CITO's applicability to problems in which only a few, simple geometries are allowed to make contact. This paper introduces simultaneous trajectory optimization and contact selection (STOCS), as an extension of CITO that overcomes this limitation. The innovation of STOCS is to identify salient contact points and times inside the iterative trajectory optimization process. This effectively reduces the number of variables and constraints in each MPCC invocation. The STOCS framework, instantiated with key contact identification subroutines, renders the optimization of manipulation trajectories computationally tractable even for high-fidelity geometries consisting of tens of thousands of vertices. △ Less

Submitted 23 July, 2024; originally announced July 2024.

Comments: arXiv admin note: text overlap with arXiv:2306.06465

SAM-EG: Segment Anything Model with Egde Guidance framework for efficient Polyp Segmentation

Authors: Quoc-Huy Trinh, Hai-Dang Nguyen, Bao-Tram Nguyen Ngoc, Debesh Jha, Ulas Bagci, Minh-Triet Tran

Abstract: Polyp segmentation, a critical concern in medical imaging, has prompted numerous proposed methods aimed at enhancing the quality of segmented masks. While current state-of-the-art techniques produce impressive results, the size and computational cost of these models pose challenges for practical industry applications. Recently, the Segment Anything Model (SAM) has been proposed as a robust foundat… ▽ More Polyp segmentation, a critical concern in medical imaging, has prompted numerous proposed methods aimed at enhancing the quality of segmented masks. While current state-of-the-art techniques produce impressive results, the size and computational cost of these models pose challenges for practical industry applications. Recently, the Segment Anything Model (SAM) has been proposed as a robust foundation model, showing promise for adaptation to medical image segmentation. Inspired by this concept, we propose SAM-EG, a framework that guides small segmentation models for polyp segmentation to address the computation cost challenge. Additionally, in this study, we introduce the Edge Guiding module, which integrates edge information into image features to assist the segmentation model in addressing boundary issues from current segmentation model in this task. Through extensive experiments, our small models showcase their efficacy by achieving competitive results with state-of-the-art methods, offering a promising approach to developing compact models with high accuracy for polyp segmentation and in the broader field of medical imaging. △ Less

Submitted 20 June, 2024; originally announced June 2024.

Ethical Framework for Responsible Foundational Models in Medical Imaging

Authors: Debesh Jha, Gorkem Durak, Abhijit Das, Jasmer Sanjotra, Onkar Susladkar, Suramyaa Sarkar, Ashish Rauniyar, Nikhil Kumar Tomar, Linkai Peng, Sirui Li, Koushik Biswas, Ertugrul Aktas, Elif Keles, Matthew Antalek, Zheyuan Zhang, Bin Wang, Xin Zhu, Hongyi Pan, Deniz Seyithanoglu, Alpay Medetalibeyoglu, Vanshali Sharma, Vedat Cicek, Amir A. Rahsepar, Rutger Hendrix, A. Enis Cetin , et al. (11 additional authors not shown)

Abstract: The emergence of foundational models represents a paradigm shift in medical imaging, offering extraordinary capabilities in disease detection, diagnosis, and treatment planning. These large-scale artificial intelligence systems, trained on extensive multimodal and multi-center datasets, demonstrate remarkable versatility across diverse medical applications. However, their integration into clinical… ▽ More The emergence of foundational models represents a paradigm shift in medical imaging, offering extraordinary capabilities in disease detection, diagnosis, and treatment planning. These large-scale artificial intelligence systems, trained on extensive multimodal and multi-center datasets, demonstrate remarkable versatility across diverse medical applications. However, their integration into clinical practice presents complex ethical challenges that extend beyond technical performance metrics. This study examines the critical ethical considerations at the intersection of healthcare and artificial intelligence. Patient data privacy remains a fundamental concern, particularly given these models' requirement for extensive training data and their potential to inadvertently memorize sensitive information. Algorithmic bias poses a significant challenge in healthcare, as historical disparities in medical data collection may perpetuate or exacerbate existing healthcare inequities across demographic groups. The complexity of foundational models presents significant challenges regarding transparency and explainability in medical decision-making. We propose a comprehensive ethical framework that addresses these challenges while promoting responsible innovation. This framework emphasizes robust privacy safeguards, systematic bias detection and mitigation strategies, and mechanisms for maintaining meaningful human oversight. By establishing clear guidelines for development and deployment, we aim to harness the transformative potential of foundational models while preserving the fundamental principles of medical ethics and patient-centered care. △ Less

Submitted 7 August, 2026; v1 submitted 13 April, 2024; originally announced June 2024.

Journal ref: https://www.frontiersin.org/journals/medicine/articles/10.3389/fmed.2025.1544501/full

Autonomous Robotic Assembly: From Part Singulation to Precise Assembly

Authors: Kei Ota, Devesh K. Jha, Siddarth Jain, Bill Yerazunis, Radu Corcodel, Yash Shukla, Antonia Bronars, Diego Romeres

Abstract: Imagine a robot that can assemble a functional product from the individual parts presented in any configuration to the robot. Designing such a robotic system is a complex problem which presents several open challenges. To bypass these challenges, the current generation of assembly systems is built with a lot of system integration effort to provide the structure and precision necessary for assembly… ▽ More Imagine a robot that can assemble a functional product from the individual parts presented in any configuration to the robot. Designing such a robotic system is a complex problem which presents several open challenges. To bypass these challenges, the current generation of assembly systems is built with a lot of system integration effort to provide the structure and precision necessary for assembly. These systems are mostly responsible for part singulation, part kitting, and part detection, which is accomplished by intelligent system design. In this paper, we present autonomous assembly of a gear box with minimum requirements on structure. The assembly parts are randomly placed in a two-dimensional work environment for the robot. The proposed system makes use of several different manipulation skills such as sliding for grasping, in-hand manipulation, and insertion to assemble the gear box. All these tasks are run in a closed-loop fashion using vision, tactile, and Force-Torque (F/T) sensors. We perform extensive hardware experiments to show the robustness of the proposed methods as well as the overall system. See supplementary video at https://www.youtube.com/watch?v=cZ9M1DQ23OI. △ Less

Submitted 11 June, 2024; v1 submitted 7 June, 2024; originally announced June 2024.

Comments: Under submission

PP-SAM: Perturbed Prompts for Robust Adaptation of Segment Anything Model for Polyp Segmentation

Authors: Md Mostafijur Rahman, Mustafa Munir, Debesh Jha, Ulas Bagci, Radu Marculescu

Abstract: The Segment Anything Model (SAM), originally designed for general-purpose segmentation tasks, has been used recently for polyp segmentation. Nonetheless, fine-tuning SAM with data from new imaging centers or clinics poses significant challenges. This is because this necessitates the creation of an expensive and time-intensive annotated dataset, along with the potential for variability in user prom… ▽ More The Segment Anything Model (SAM), originally designed for general-purpose segmentation tasks, has been used recently for polyp segmentation. Nonetheless, fine-tuning SAM with data from new imaging centers or clinics poses significant challenges. This is because this necessitates the creation of an expensive and time-intensive annotated dataset, along with the potential for variability in user prompts during inference. To address these issues, we propose a robust fine-tuning technique, PP-SAM, that allows SAM to adapt to the polyp segmentation task with limited images. To this end, we utilize variable perturbed bounding box prompts (BBP) to enrich the learning context and enhance the model's robustness to BBP perturbations during inference. Rigorous experiments on polyp segmentation benchmarks reveal that our variable BBP perturbation significantly improves model resilience. Notably, on Kvasir, 1-shot fine-tuning boosts the DICE score by 20% and 37% with 50 and 100-pixel BBP perturbations during inference, respectively. Moreover, our experiments show that 1-shot, 5-shot, and 10-shot PP-SAM with 50-pixel perturbations during inference outperform a recent state-of-the-art (SOTA) polyp segmentation method by 26%, 7%, and 5% DICE scores, respectively. Our results motivate the broader applicability of our PP-SAM for other medical imaging tasks with limited samples. Our implementation is available at https://github.com/SLDGroup/PP-SAM. △ Less

Submitted 26 May, 2024; originally announced May 2024.

Comments: 7 pages, 9 figures, Proceedings of the 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops

Large-Scale Multi-Center CT and MRI Segmentation of Pancreas with Deep Learning

Authors: Zheyuan Zhang, Elif Keles, Gorkem Durak, Yavuz Taktak, Onkar Susladkar, Vandan Gorade, Debesh Jha, Asli C. Ormeci, Alpay Medetalibeyoglu, Lanhong Yao, Bin Wang, Ilkin Sevgi Isler, Linkai Peng, Hongyi Pan, Camila Lopes Vendrami, Amir Bourhani, Yury Velichko, Boqing Gong, Concetto Spampinato, Ayis Pyrros, Pallavi Tiwari, Derk C. F. Klatte, Megan Engels, Sanne Hoogenboom, Candice W. Bolan , et al. (13 additional authors not shown)

Abstract: Automated volumetric segmentation of the pancreas on cross-sectional imaging is needed for diagnosis and follow-up of pancreatic diseases. While CT-based pancreatic segmentation is more established, MRI-based segmentation methods are understudied, largely due to a lack of publicly available datasets, benchmarking research efforts, and domain-specific deep learning methods. In this retrospective st… ▽ More Automated volumetric segmentation of the pancreas on cross-sectional imaging is needed for diagnosis and follow-up of pancreatic diseases. While CT-based pancreatic segmentation is more established, MRI-based segmentation methods are understudied, largely due to a lack of publicly available datasets, benchmarking research efforts, and domain-specific deep learning methods. In this retrospective study, we collected a large dataset (767 scans from 499 participants) of T1-weighted (T1W) and T2-weighted (T2W) abdominal MRI series from five centers between March 2004 and November 2022. We also collected CT scans of 1,350 patients from publicly available sources for benchmarking purposes. We developed a new pancreas segmentation method, called PanSegNet, combining the strengths of nnUNet and a Transformer network with a new linear attention module enabling volumetric computation. We tested PanSegNet's accuracy in cross-modality (a total of 2,117 scans) and cross-center settings with Dice and Hausdorff distance (HD95) evaluation metrics. We used Cohen's kappa statistics for intra and inter-rater agreement evaluation and paired t-tests for volume and Dice comparisons, respectively. For segmentation accuracy, we achieved Dice coefficients of 88.3% (std: 7.2%, at case level) with CT, 85.0% (std: 7.9%) with T1W MRI, and 86.3% (std: 6.4%) with T2W MRI. There was a high correlation for pancreas volume prediction with R^2 of 0.91, 0.84, and 0.85 for CT, T1W, and T2W, respectively. We found moderate inter-observer (0.624 and 0.638 for T1W and T2W MRI, respectively) and high intra-observer agreement scores. All MRI data is made available at https://osf.io/kysnj/. Our source code is available at https://github.com/NUBagciLab/PaNSegNet. △ Less

Submitted 24 October, 2024; v1 submitted 20 May, 2024; originally announced May 2024.

Comments: Peer-reviewer version

MDNet: Multi-Decoder Network for Abdominal CT Organs Segmentation

Authors: Debesh Jha, Nikhil Kumar Tomar, Koushik Biswas, Gorkem Durak, Matthew Antalek, Zheyuan Zhang, Bin Wang, Md Mostafijur Rahman, Hongyi Pan, Alpay Medetalibeyoglu, Yury Velichko, Daniela Ladner, Amir Borhani, Ulas Bagci

Abstract: Accurate segmentation of organs from abdominal CT scans is essential for clinical applications such as diagnosis, treatment planning, and patient monitoring. To handle challenges of heterogeneity in organ shapes, sizes, and complex anatomical relationships, we propose a \textbf{\textit{\ac{MDNet}}}, an encoder-decoder network that uses the pre-trained \textit{MiT-B2} as the encoder and multiple di… ▽ More Accurate segmentation of organs from abdominal CT scans is essential for clinical applications such as diagnosis, treatment planning, and patient monitoring. To handle challenges of heterogeneity in organ shapes, sizes, and complex anatomical relationships, we propose a \textbf{\textit{\ac{MDNet}}}, an encoder-decoder network that uses the pre-trained \textit{MiT-B2} as the encoder and multiple different decoder networks. Each decoder network is connected to a different part of the encoder via a multi-scale feature enhancement dilated block. With each decoder, we increase the depth of the network iteratively and refine segmentation masks, enriching feature maps by integrating previous decoders' feature maps. To refine the feature map further, we also utilize the predicted masks from the previous decoder to the current decoder to provide spatial attention across foreground and background regions. MDNet effectively refines the segmentation mask with a high dice similarity coefficient (DSC) of 0.9013 and 0.9169 on the Liver Tumor segmentation (LiTS) and MSD Spleen datasets. Additionally, it reduces Hausdorff distance (HD) to 3.79 for the LiTS dataset and 2.26 for the spleen segmentation dataset, underscoring the precision of MDNet in capturing the complex contours. Moreover, \textit{\ac{MDNet}} is more interpretable and robust compared to the other baseline models. △ Less

Submitted 9 May, 2024; originally announced May 2024.

PAM-UNet: Shifting Attention on Region of Interest in Medical Images

Authors: Abhijit Das, Debesh Jha, Vandan Gorade, Koushik Biswas, Hongyi Pan, Zheyuan Zhang, Daniela P. Ladner, Yury Velichko, Amir Borhani, Ulas Bagci

Abstract: Computer-aided segmentation methods can assist medical personnel in improving diagnostic outcomes. While recent advancements like UNet and its variants have shown promise, they face a critical challenge: balancing accuracy with computational efficiency. Shallow encoder architectures in UNets often struggle to capture crucial spatial features, leading in inaccurate and sparse segmentation. To addre… ▽ More Computer-aided segmentation methods can assist medical personnel in improving diagnostic outcomes. While recent advancements like UNet and its variants have shown promise, they face a critical challenge: balancing accuracy with computational efficiency. Shallow encoder architectures in UNets often struggle to capture crucial spatial features, leading in inaccurate and sparse segmentation. To address this limitation, we propose a novel \underline{P}rogressive \underline{A}ttention based \underline{M}obile \underline{UNet} (\underline{PAM-UNet}) architecture. The inverted residual (IR) blocks in PAM-UNet help maintain a lightweight framework, while layerwise \textit{Progressive Luong Attention} ($\mathcal{PLA}$) promotes precise segmentation by directing attention toward regions of interest during synthesis. Our approach prioritizes both accuracy and speed, achieving a commendable balance with a mean IoU of 74.65 and a dice score of 82.87, while requiring only 1.32 floating-point operations per second (FLOPS) on the Liver Tumor Segmentation Benchmark (LiTS) 2017 dataset. These results highlight the importance of developing efficient segmentation models to accelerate the adoption of AI in clinical practice. △ Less

Submitted 2 May, 2024; originally announced May 2024.

Comments: Accepted at 2024 IEEE EMBC

Detection of Peri-Pancreatic Edema using Deep Learning and Radiomics Techniques

Authors: Ziliang Hong, Debesh Jha, Koushik Biswas, Zheyuan Zhang, Yury Velichko, Cemal Yazici, Temel Tirkes, Amir Borhani, Baris Turkbey, Alpay Medetalibeyoglu, Gorkem Durak, Ulas Bagci

Abstract: Identifying peri-pancreatic edema is a pivotal indicator for identifying disease progression and prognosis, emphasizing the critical need for accurate detection and assessment in pancreatitis diagnosis and management. This study \textit{introduces a novel CT dataset sourced from 255 patients with pancreatic diseases, featuring annotated pancreas segmentation masks and corresponding diagnostic labe… ▽ More Identifying peri-pancreatic edema is a pivotal indicator for identifying disease progression and prognosis, emphasizing the critical need for accurate detection and assessment in pancreatitis diagnosis and management. This study \textit{introduces a novel CT dataset sourced from 255 patients with pancreatic diseases, featuring annotated pancreas segmentation masks and corresponding diagnostic labels for peri-pancreatic edema condition}. With the novel dataset, we first evaluate the efficacy of the \textit{LinTransUNet} model, a linear Transformer based segmentation algorithm, to segment the pancreas accurately from CT imaging data. Then, we use segmented pancreas regions with two distinctive machine learning classifiers to identify existence of peri-pancreatic edema: deep learning-based models and a radiomics-based eXtreme Gradient Boosting (XGBoost). The LinTransUNet achieved promising results, with a dice coefficient of 80.85\%, and mIoU of 68.73\%. Among the nine benchmarked classification models for peri-pancreatic edema detection, \textit{Swin-Tiny} transformer model demonstrated the highest recall of $98.85 \pm 0.42$ and precision of $98.38\pm 0.17$. Comparatively, the radiomics-based XGBoost model achieved an accuracy of $79.61\pm4.04$ and recall of $91.05\pm3.28$, showcasing its potential as a supplementary diagnostic tool given its rapid processing speed and reduced training time. Our code is available \url{https://github.com/NUBagciLab/Peri-Pancreatic-Edema-Detection}. △ Less

Submitted 25 April, 2024; originally announced April 2024.

Exploring the Decentraland Economy: Multifaceted Parcel Attributes, Key Insights, and Benchmarking

Authors: Dipika Jha, Ankit K. Bhagat, Raju Halder, Rajendra N. Paramanik, Chandra M. Kumar

Abstract: This paper presents a comprehensive Decentraland parcels dataset, called IITP-VDLand, sourced from diverse platforms such as Decentraland, OpenSea, Etherscan, Google BigQuery, and various Social Media Platforms. Unlike existing datasets which have limited attributes and records, IITP-VDLand offers a rich array of attributes, encompassing parcel characteristics, trading history, past activities, tr… ▽ More This paper presents a comprehensive Decentraland parcels dataset, called IITP-VDLand, sourced from diverse platforms such as Decentraland, OpenSea, Etherscan, Google BigQuery, and various Social Media Platforms. Unlike existing datasets which have limited attributes and records, IITP-VDLand offers a rich array of attributes, encompassing parcel characteristics, trading history, past activities, transactions, and social media interactions. Alongside, we introduce a key attribute in the dataset, namely Rarity score, which measures the uniqueness of each parcel within the virtual world. Addressing the significant challenge posed by the dispersed nature of this data across various sources, we employ a systematic approach, utilizing both available APIs and custom scripts, to gather it. Subsequently, we meticulously curate and organize the information into four distinct fragments: (1) Characteristics, (2) OpenSea Trading History, (3) Ethereum Activity Transactions, and (4) Social Media. We envisage that this dataset would serve as a robust resource for training machine- and deep-learning models specifically designed to address real-world challenges within the domain of Decentraland parcels. The performance benchmarking of more than 20 state-of-the-art price prediction models on our dataset yields promising results, achieving a maximum R2 score of 0.8251 and an accuracy of 74.23% in case of Extra Trees Regressor and Classifier. The key findings reveal that the ensemble models perform better than both deep learning and linear models for our dataset. We observe a significant impact of coordinates, geographical proximity, rarity score, and few other economic indicators on the prediction of parcel prices. △ Less

Submitted 2 March, 2025; v1 submitted 11 April, 2024; originally announced April 2024.