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Operation and performance of ProtoDUNE Dual Phase liquid argon time projection chamber
Authors:
DUNE Collaboration,
S. Abbaslu,
F. Abd Alrahman,
A. Abed Abud,
R. Acciarri,
L. P. Accorsi,
M. A. Acero,
M. R. Adames,
G. Adamov,
M. Adamowski,
K. Adhikari,
C. Adriano,
K. Agudelo-Jaramillo,
F. Akbar,
F. Alemanno,
N. S. Alex,
L. Aliaga Soplin,
A. Alqaisi,
M. Alrashed,
A. Alton,
R. Alvarez,
T. Alves,
A. Aman,
H. Amar,
R. Amarinei
, et al. (1341 additional authors not shown)
Abstract:
ProtoDUNE-DP was the largest ever built Liquid Argon Time Projection Chamber (LArTPC) operating in Dual-Phase (DP) mode, with a liquid target and charge read-out placed in the gas. It had an active volume of $6\times6\times6$\,m$^3$ corresponding to an active mass of 300\,t (total LAr mass of 720\,t), constructed at the CERN Neutrino Platform and took data from 2019 to 2020 with cosmic muons. In P…
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ProtoDUNE-DP was the largest ever built Liquid Argon Time Projection Chamber (LArTPC) operating in Dual-Phase (DP) mode, with a liquid target and charge read-out placed in the gas. It had an active volume of $6\times6\times6$\,m$^3$ corresponding to an active mass of 300\,t (total LAr mass of 720\,t), constructed at the CERN Neutrino Platform and took data from 2019 to 2020 with cosmic muons. In ProtoDUNE-DP the electric drift field is oriented in the vertical direction, causing the electrons to drift vertically towards the anode at the top. The ionization charge is then extracted into the gaseous argon above the liquid surface, amplified by Townsend avalanches, and collected by the charge readout planes. The detector experienced significant technical problems affecting the long-term operation of the Charge Readout Planes, formed by the Large Electron Multipliers, but other critical segments demonstrated required performance including the delivery of -300 kV to the TPC cathode, verification of replaceable charge read-out electronics, and operation of the photon detection system. ProtoDUNE-DP experience resulted in improved designs of the Vertical Drift LArTPC.
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Submitted 21 July, 2026; v1 submitted 17 July, 2026;
originally announced July 2026.
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How geometry of subduction zones correlates with earthquake dynamics
Authors:
Oscar Y. L. Chau,
Rebecca Bendick,
Gary P. T. Choi,
L. Mahadevan
Abstract:
Subduction zones on the surface of the Earth, where abrupt sliding leads to earthquakes, are generally curved and localized. How does the geometry of these zones influence the occurrence of megathrust earthquakes? Here we use a combination of simple scaling arguments and data analysis using the differential geometry of surfaces to examine the relationship between the earthquake productivity of sub…
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Subduction zones on the surface of the Earth, where abrupt sliding leads to earthquakes, are generally curved and localized. How does the geometry of these zones influence the occurrence of megathrust earthquakes? Here we use a combination of simple scaling arguments and data analysis using the differential geometry of surfaces to examine the relationship between the earthquake productivity of subduction zones and their shape. A scaling argument suggests how interface curvature changes both the accumulation and release of stress relative to planar interfaces; conformable sliding along relatively flat subduction zones should lead to rare but large events, while curved subduction zones should lead to frequent smaller events. To test this, we leverage global geometry datasets and analyze the correlation between the surface curvatures of the subduction zones and the frequency and magnitude of earthquakes therein. Our analysis shows that weakly curved slab geometries are associated with rarer larger magnitude events, while slab geometries with a larger relative dispersion in curvature are associated with frequent but smaller magnitude events. Using different scale-dependent shape metrics of the subduction zones, we show that the earthquake productivity is influenced by the conformability of the overriding and downgoing plates. More broadly, our results suggest the need to incorporate the large-scale geometry of subduction zones in computational models and predictive frameworks for earthquake risk.
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Submitted 1 June, 2026;
originally announced June 2026.
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Charge readout electronics for the DUNE horizontal drift far detector: design and performance in ProtoDUNE-HD
Authors:
DUNE Collaboration,
S. Abbaslu,
F. Abd Alrahman,
A. Abed Abud,
R. Acciarri,
L. P. Accorsi,
M. A. Acero,
M. R. Adames,
G. Adamov,
M. Adamowski,
K. Adhikari,
C. Adriano,
K. Agudelo-Jaramillo,
F. Akbar,
F. Alemanno,
N. S. Alex,
L. Aliaga Soplin,
A. Alqaisi,
M. Alrashed,
A. Alton,
R. Alvarez,
T. Alves,
A. Aman,
H. Amar,
R. Amarinei
, et al. (1346 additional authors not shown)
Abstract:
DUNE (Deep Underground Neutrino Experiment) is a long-baseline neutrino oscillation experiment currently under construction, whose far detectors will be the largest liquid argon time projection chambers ever built. This detector design calls for custom-built cryogenic front-end electronics to meet its performance requirements. This paper describes the charge readout electronics that will be used i…
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DUNE (Deep Underground Neutrino Experiment) is a long-baseline neutrino oscillation experiment currently under construction, whose far detectors will be the largest liquid argon time projection chambers ever built. This detector design calls for custom-built cryogenic front-end electronics to meet its performance requirements. This paper describes the charge readout electronics that will be used in the DUNE horizontal drift (HD) far detector and presents performance results using data from the ProtoDUNE-HD detector, a 770 ton liquid argon time projection chamber operated at the CERN Neutrino Platform in 2024 that served as the final prototype of the DUNE HD design.
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Submitted 12 August, 2026; v1 submitted 26 April, 2026;
originally announced April 2026.
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Study of Low-Frequency Core-Edge Coupling in a Tokamak: I. Experimental Observation in KSTAR
Authors:
Wonjun Lee,
Andreas Bierwage,
Seungmin Bong,
Jaewook Kim,
K. D. Lee,
J. G. Bak,
G. J. Choi,
C. Sung,
Y. -c. Ghim
Abstract:
Double-peaked fishbone events across multiple KSTAR discharges are investigated. The normalized beta $β_{\mathrm{N}}$ and the edge safety factor $q_{\mathrm{95}}$ under which the fishbones appear vary depending on the presence and form of external magnetic perturbations. The fishbone strength is closely related to $β_{\mathrm{N}}$ and $q_{\mathrm{95}}$: as $β_{\mathrm{N}}$ increases and…
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Double-peaked fishbone events across multiple KSTAR discharges are investigated. The normalized beta $β_{\mathrm{N}}$ and the edge safety factor $q_{\mathrm{95}}$ under which the fishbones appear vary depending on the presence and form of external magnetic perturbations. The fishbone strength is closely related to $β_{\mathrm{N}}$ and $q_{\mathrm{95}}$: as $β_{\mathrm{N}}$ increases and $q_{\mathrm{95}}$ decreases, the fishbone strength increases. Measured fishbone-relevant signals are decomposed into amplitude envelope and phase components in the temporal domain, which are analyzed separately. In terms of the amplitude envelope component, the edge electron temperature fluctuation $\tilde T_\mathrm{e}^{\mathrm{Edge}}$ becomes more correlated with the poloidal magnetic fluctuation $\dot{B}_\mathrmθ$ compared to the core electron temperature fluctuation $\tilde T_\mathrm{e}^{\mathrm{Core}}$ as fishbone strength increases. In terms of the phase component, the phase of $\tilde T_\mathrm{e}^{\mathrm{Edge}}$ precedes the phase of $\tilde T_\mathrm{e}^{\mathrm{Core}}$ except in the case of very weak fishbones where the phase relations are inconclusive due to weak fishbone activity at the edge plasma, which is comparable to background fluctuations. The investigation suggests the possibility that the edge activity is not a mere side effect of the core activity, but could play an active role.
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Submitted 16 April, 2026; v1 submitted 25 March, 2026;
originally announced March 2026.
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Study of Low-Frequency Core-Edge Coupling in a Tokamak: II. Spatial Channeling & Focusing In Antenna-Driven MHD
Authors:
Andreas Bierwage,
Wonjun Lee,
Young-chul Ghim,
Panith Adulsiriswad,
Nobuyuki Aiba,
Seungmin Bong,
Gyungjin Choi,
Matteo Falessi,
Philipp W. Lauber,
Masatoshi Yagi
Abstract:
Motivated by evidence for core-edge coupling in the form of double-peaked fishbone-like low-frequency modes ($\lesssim 20\,{\rm kHz}$) in KSTAR, which exhibit synchronized Alfvénic activity both in the central core and near the plasma edge [1], we study the nonlocal response of a tokamak plasma in a visco-resistive full MHD simulation model using the code MEGA. The waves are driven by an internal…
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Motivated by evidence for core-edge coupling in the form of double-peaked fishbone-like low-frequency modes ($\lesssim 20\,{\rm kHz}$) in KSTAR, which exhibit synchronized Alfvénic activity both in the central core and near the plasma edge [1], we study the nonlocal response of a tokamak plasma in a visco-resistive full MHD simulation model using the code MEGA. The waves are driven by an internal "antenna" that is localized both radially and azimuthally in the poloidal $(R,z)$ plane and has a sinusoidal form $\exp(inζ- iωt)$ with Fourier mode number $n=\pm 1$ in the toroidal angle $ζ$ and fixed angular frequency $ω$ in time $t$. By flattening the safety factor profile $q(r)$ at suitable locations in the minor radius $r$, we created plateaus in the low-frequency Alfvén continua that act as wave "receivers". First, we confirm that such continuum plateaus respond with a coherent quasi-mode even when the driving antenna is located at a distant radius. Second, by varying the antenna location, we confirm the expectation of inward drive being more efficient than outward drive, which we attribute to volumetric focusing. Third, we find that the central core also responds well at frequencies below the central Alfvénic continuum plateau, which could facilitate chirping. Our results show that a core-localized low-frequency response does not necessarily require core-localized drive nor an exactly matching continuum, but may be driven from the edge and sub-resonantly. It remains to be seen to what extent the examined effects play a role in double-peaked fishbone-like activity. Other possible contributing mechanisms are discussed to motivate further study. Our analyses also elucidate the mode structure formation process, from transients to quasi- or eigenmodes, here in the realm of MHD, and to be followed by a verification study against kinetic models.
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Submitted 16 April, 2026; v1 submitted 25 March, 2026;
originally announced March 2026.
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Ultra-low loss piezo-optomechanical low-confinement silicon nitride platform for visible wavelength quantum photonic circuits
Authors:
Mayank Mishra,
Gwangho Choi,
Wenhua He,
Gina M. Talcott,
Katherine Kearney,
Michael Gehl,
Andrew Leenheer,
Daniel Dominguez,
Nils T. Otterstrom,
Matt Eichenfield
Abstract:
The stringent demands of photonic quantum computing protocols motivate photonic integrated circuit (PIC) platforms with passive optical properties such as extremely low losses and correspondingly large circuit depths, as well as active optical properties such as high reconfiguration rates, low power dissipation, and minimal crosstalk. At the same time, many quantum photonic resource state generato…
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The stringent demands of photonic quantum computing protocols motivate photonic integrated circuit (PIC) platforms with passive optical properties such as extremely low losses and correspondingly large circuit depths, as well as active optical properties such as high reconfiguration rates, low power dissipation, and minimal crosstalk. At the same time, many quantum photonic resource state generators, such as single-photon sources and quantum memories, require operation in the visible wavelength range. These requirements make the passive optical properties of CMOS-fabricated, ultralow-loss, low-confinement silicon nitride waveguides especially attractive. However, the conventional active properties of these systems based on thermo-optic modulation are plagued by high levels of crosstalk, slow modulation rates, and high power dissipation. Although there have been recent demonstrations of CMOS-fabricated, visible wavelength, piezo-optomechanical PICs that solve the above challenges associated with implementing active functionality, these have made use of high-confinement waveguides with currently demonstrated losses of order $0.3$-$1~\mathrm{dB/cm}$, precluding circuit depths required for scalable quantum algorithms. Here, we demonstrate that combining piezo-optomechanical actuation with a low-confinement, ultra-low loss silicon nitride platform addresses the scalability challenge while enabling high-performance active functionality at visible wavelengths. This platform achieves a propagation loss $0.026~\mathrm{dB/cm}$ at $780~\mathrm{nm}$, modulation bandwidths in the MHz range, and a phase shifter voltage-length product ($V_πL$) of approximately $2.8~\mathrm{\mathrm{V}\cdot\mathrm{m}}$ and negligible hysteresis. We further demonstrate reconfigurable Mach-Zehnder interferometers based on spiral phase shifters with 0.63 dB loss per phase shifter.
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Submitted 8 March, 2026; v1 submitted 2 March, 2026;
originally announced March 2026.
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Operation of a Modular 3D-Pixelated Liquid Argon Time-Projection Chamber in a Neutrino Beam
Authors:
DUNE Collaboration,
S. Abbaslu,
A. Abed Abud,
R. Acciarri,
L. P. Accorsi,
M. A. Acero,
M. R. Adames,
G. Adamov,
M. Adamowski,
C. Adriano,
F. Akbar,
F. Alemanno,
N. S. Alex,
K. Allison,
M. Alrashed,
A. Alton,
R. Alvarez,
T. Alves,
A. Aman,
H. Amar,
P. Amedo,
J. Anderson,
D. A. Andrade,
C. Andreopoulos,
M. Andreotti
, et al. (1299 additional authors not shown)
Abstract:
The 2x2 Demonstrator, a prototype for the Deep Underground Neutrino Experiment (DUNE) liquid argon (LAr) Near Detector, was exposed to the Neutrinos from the Main Injector (NuMI) neutrino beam at Fermi National Accelerator Laboratory (Fermilab). This detector prototypes a new modular design for a liquid argon time-projection chamber (LArTPC), comprised of a two-by-two array of four modules, each f…
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The 2x2 Demonstrator, a prototype for the Deep Underground Neutrino Experiment (DUNE) liquid argon (LAr) Near Detector, was exposed to the Neutrinos from the Main Injector (NuMI) neutrino beam at Fermi National Accelerator Laboratory (Fermilab). This detector prototypes a new modular design for a liquid argon time-projection chamber (LArTPC), comprised of a two-by-two array of four modules, each further segmented into two optically-isolated LArTPCs. The 2x2 Demonstrator features a number of pioneering technologies, including a low-profile resistive field shell to establish drift fields, native 3D ionization pixelated imaging, and a high-coverage dielectric light readout system. The 2.4 tonne active mass detector is flanked upstream and downstream by supplemental solid-scintillator tracking planes, repurposed from the MINERvA experiment, which track ionizing particles exiting the argon volume. The antineutrino beam data collected by the detector over a 4.5 day period in 2024 include over 30,000 neutrino interactions in the LAr active volume-the first neutrino interactions reported by a DUNE detector prototype. During its physics-quality run, the 2x2 Demonstrator operated at a nominal drift field of 500 V/cm and maintained good LAr purity, with a stable electron lifetime of approximately 1.25 ms. This paper describes the detector and supporting systems, summarizes the installation and commissioning, and presents the initial validation of collected NuMI beam and off-beam self-triggers. In addition, it highlights observed interactions in the detector volume, including candidate muon anti-neutrino events.
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Submitted 17 June, 2026; v1 submitted 6 September, 2025;
originally announced September 2025.
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Spatial and Temporal Evaluations of the Liquid Argon Purity in ProtoDUNE-SP
Authors:
DUNE Collaboration,
S. Abbaslu,
A. Abed Abud,
R. Acciarri,
L. P. Accorsi,
M. A. Acero,
M. R. Adames,
G. Adamov,
M. Adamowski,
C. Adriano,
F. Akbar,
F. Alemanno,
N. S. Alex,
K. Allison,
M. Alrashed,
A. Alton,
R. Alvarez,
T. Alves,
A. Aman,
H. Amar,
P. Amedo,
J. Anderson,
D. A. Andrade,
C. Andreopoulos,
M. Andreotti
, et al. (1301 additional authors not shown)
Abstract:
Liquid argon time projection chambers (LArTPCs) rely on highly pure argon to ensure that ionization electrons produced by charged particles reach readout arrays. ProtoDUNE Single-Phase (ProtoDUNE-SP) was an approximately 700-ton liquid argon detector intended to prototype the Deep Underground Neutrino Experiment (DUNE) Far Detector Horizontal Drift module. It contains two drift volumes bisected by…
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Liquid argon time projection chambers (LArTPCs) rely on highly pure argon to ensure that ionization electrons produced by charged particles reach readout arrays. ProtoDUNE Single-Phase (ProtoDUNE-SP) was an approximately 700-ton liquid argon detector intended to prototype the Deep Underground Neutrino Experiment (DUNE) Far Detector Horizontal Drift module. It contains two drift volumes bisected by the cathode plane assembly, which is biased to create an almost uniform electric field in both volumes. The DUNE Far Detector modules must have robust cryogenic systems capable of filtering argon and supplying the TPC with clean liquid. This paper will explore comparisons of the argon purity measured by the purity monitors with those measured using muons in the TPC from October 2018 to November 2018. A new method is introduced to measure the liquid argon purity in the TPC using muons crossing both drift volumes of ProtoDUNE-SP. For extended periods on the timescale of weeks, the drift electron lifetime was measured to be above 30 ms using both systems. A particular focus will be placed on the measured purity of argon as a function of position in the detector.
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Submitted 27 August, 2025; v1 submitted 11 July, 2025;
originally announced July 2025.
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European Contributions to Fermilab Accelerator Upgrades and Facilities for the DUNE Experiment
Authors:
DUNE Collaboration,
A. Abed Abud,
R. Acciarri,
M. A. Acero,
M. R. Adames,
G. Adamov,
M. Adamowski,
D. Adams,
M. Adinolfi,
C. Adriano,
A. Aduszkiewicz,
J. Aguilar,
F. Akbar,
F. Alemanno,
N. S. Alex,
K. Allison,
M. Alrashed,
A. Alton,
R. Alvarez,
T. Alves,
A. Aman,
H. Amar,
P. Amedo,
J. Anderson,
D. A. Andrade
, et al. (1322 additional authors not shown)
Abstract:
The Proton Improvement Plan (PIP-II) to the FNAL accelerator chain and the Long-Baseline Neutrino Facility (LBNF) will provide the world's most intense neutrino beam to the Deep Underground Neutrino Experiment (DUNE) enabling a wide-ranging physics program. This document outlines the significant contributions made by European national laboratories and institutes towards realizing the first phase o…
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The Proton Improvement Plan (PIP-II) to the FNAL accelerator chain and the Long-Baseline Neutrino Facility (LBNF) will provide the world's most intense neutrino beam to the Deep Underground Neutrino Experiment (DUNE) enabling a wide-ranging physics program. This document outlines the significant contributions made by European national laboratories and institutes towards realizing the first phase of the project with a 1.2 MW neutrino beam. Construction of this first phase is well underway. For DUNE Phase II, this will be closely followed by an upgrade of the beam power to > 2 MW, for which the European groups again have a key role and which will require the continued support of the European community for machine aspects of neutrino physics. Beyond the neutrino beam aspects, LBNF is also responsible for providing unique infrastructure to install and operate the DUNE neutrino detectors at FNAL and at the Sanford Underground Research Facility (SURF). The cryostats for the first two Liquid Argon Time Projection Chamber detector modules at SURF, a contribution of CERN to LBNF, are central to the success of the ongoing execution of DUNE Phase I. Likewise, successful and timely procurement of cryostats for two additional detector modules at SURF will be critical to the success of DUNE Phase II and the overall physics program. The DUNE Collaboration is submitting four main contributions to the 2026 Update of the European Strategy for Particle Physics process. This paper is being submitted to the 'Accelerator technologies' and 'Projects and Large Experiments' streams. Additional inputs related to the DUNE science program, DUNE detector technologies and R&D, and DUNE software and computing, are also being submitted to other streams.
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Submitted 31 March, 2025;
originally announced March 2025.
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DUNE Software and Computing Research and Development
Authors:
DUNE Collaboration,
A. Abed Abud,
R. Acciarri,
M. A. Acero,
M. R. Adames,
G. Adamov,
M. Adamowski,
D. Adams,
M. Adinolfi,
C. Adriano,
A. Aduszkiewicz,
J. Aguilar,
F. Akbar,
F. Alemanno,
N. S. Alex,
K. Allison,
M. Alrashed,
A. Alton,
R. Alvarez,
T. Alves,
A. Aman,
H. Amar,
P. Amedo,
J. Anderson,
D. A. Andrade
, et al. (1322 additional authors not shown)
Abstract:
The international collaboration designing and constructing the Deep Underground Neutrino Experiment (DUNE) at the Long-Baseline Neutrino Facility (LBNF) has developed a two-phase strategy toward the implementation of this leading-edge, large-scale science project. The ambitious physics program of Phase I and Phase II of DUNE is dependent upon deployment and utilization of significant computing res…
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The international collaboration designing and constructing the Deep Underground Neutrino Experiment (DUNE) at the Long-Baseline Neutrino Facility (LBNF) has developed a two-phase strategy toward the implementation of this leading-edge, large-scale science project. The ambitious physics program of Phase I and Phase II of DUNE is dependent upon deployment and utilization of significant computing resources, and successful research and development of software (both infrastructure and algorithmic) in order to achieve these scientific goals. This submission discusses the computing resources projections, infrastructure support, and software development needed for DUNE during the coming decades as an input to the European Strategy for Particle Physics Update for 2026. The DUNE collaboration is submitting four main contributions to the 2026 Update of the European Strategy for Particle Physics process. This submission to the 'Computing' stream focuses on DUNE software and computing. Additional inputs related to the DUNE science program, DUNE detector technologies and R&D, and European contributions to Fermilab accelerator upgrades and facilities for the DUNE experiment, are also being submitted to other streams.
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Submitted 31 March, 2025;
originally announced March 2025.
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The DUNE Phase II Detectors
Authors:
DUNE Collaboration,
A. Abed Abud,
R. Acciarri,
M. A. Acero,
M. R. Adames,
G. Adamov,
M. Adamowski,
D. Adams,
M. Adinolfi,
C. Adriano,
A. Aduszkiewicz,
J. Aguilar,
F. Akbar,
F. Alemanno,
N. S. Alex,
K. Allison,
M. Alrashed,
A. Alton,
R. Alvarez,
T. Alves,
A. Aman,
H. Amar,
P. Amedo,
J. Anderson,
D. A. Andrade
, et al. (1322 additional authors not shown)
Abstract:
The international collaboration designing and constructing the Deep Underground Neutrino Experiment (DUNE) at the Long-Baseline Neutrino Facility (LBNF) has developed a two-phase strategy for the implementation of this leading-edge, large-scale science project. The 2023 report of the US Particle Physics Project Prioritization Panel (P5) reaffirmed this vision and strongly endorsed DUNE Phase I and…
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The international collaboration designing and constructing the Deep Underground Neutrino Experiment (DUNE) at the Long-Baseline Neutrino Facility (LBNF) has developed a two-phase strategy for the implementation of this leading-edge, large-scale science project. The 2023 report of the US Particle Physics Project Prioritization Panel (P5) reaffirmed this vision and strongly endorsed DUNE Phase I and Phase II, as did the previous European Strategy for Particle Physics. The construction of DUNE Phase I is well underway. DUNE Phase II consists of a third and fourth far detector module, an upgraded near detector complex, and an enhanced > 2 MW beam. The fourth FD module is conceived as a 'Module of Opportunity', aimed at supporting the core DUNE science program while also expanding the physics opportunities with more advanced technologies. The DUNE collaboration is submitting four main contributions to the 2026 Update of the European Strategy for Particle Physics process. This submission to the 'Detector instrumentation' stream focuses on technologies and R&D for the DUNE Phase II detectors. Additional inputs related to the DUNE science program, DUNE software and computing, and European contributions to Fermilab accelerator upgrades and facilities for the DUNE experiment, are also being submitted to other streams.
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Submitted 29 March, 2025;
originally announced March 2025.
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Gyrokinetic simulations of the effects of magnetic islands on microturbulence in KSTAR
Authors:
Xishuo Wei,
Javier H Nicolau,
Gyungjin Choi,
Zhihong Lin,
SeongMoo Yang,
SangKyeun Kim,
WooChang Lee,
Chen Zhao,
Tyler Cote,
JongKyu Park,
Dmitri Orlov
Abstract:
Gyrokinetic simulations are utilized to study effects of magnetic islands on the ion temperature gradient (ITG) turbulence in the KSTAR tokamak with resonant magnetic perturbations. Simulations show that the transport is controlled by the nonlinear interactions between the ITG turbulence and self-generated vortex flows and zonal flows, leading to an anisotropic structure of fluctuation and transpo…
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Gyrokinetic simulations are utilized to study effects of magnetic islands on the ion temperature gradient (ITG) turbulence in the KSTAR tokamak with resonant magnetic perturbations. Simulations show that the transport is controlled by the nonlinear interactions between the ITG turbulence and self-generated vortex flows and zonal flows, leading to an anisotropic structure of fluctuation and transport on the poloidal plane and in the toroidal direction. Magnetic islands greatly enhance turbulent transport of both particle and heat. The turbulent transport exhibits variations in the toroidal direction, with transport through the resonant layer near the island X-point being enhanced when the X-point is located at the outer mid-plane. A quantitative agreement is shown between simulations and KSTAR experiments in terms of time frequency and perpendicular wavevector spectrum.
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Submitted 8 January, 2025; v1 submitted 12 December, 2024;
originally announced December 2024.
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Anisotropic manipulation of terahertz spin-waves by spin-orbit torque in a canted antiferromagnet
Authors:
T. H. Kim,
Jung-Il Kim,
Geun-Ju Kim,
Kwang-Ho Jang,
G. -M. Choi
Abstract:
We theoretically and numerically elucidate the electrical control over spin waves in antiferromagnetic materials (AFM) with biaxial anisotropies and Dzyaloshinskii-Moriya interactions. The spin wave dispersion in an AFM manifests as a bifurcated spectrum with distinct high-frequency and low-frequency bands. Utilizing a heterostructure comprised of platinum and the AFM, we demonstrate anisotropic c…
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We theoretically and numerically elucidate the electrical control over spin waves in antiferromagnetic materials (AFM) with biaxial anisotropies and Dzyaloshinskii-Moriya interactions. The spin wave dispersion in an AFM manifests as a bifurcated spectrum with distinct high-frequency and low-frequency bands. Utilizing a heterostructure comprised of platinum and the AFM, we demonstrate anisotropic control of spin-wave bands via spin currents with three-dimensional spin polarizations, encompassing both resonant and propagating wave modes. Moreover, leveraging the confined geometry, we explore the possibility of controlling spin waves within a spectral domain ranging from tens of gigahertz to sub-terahertz frequencies. The implications of our findings suggest the potential for developing a terahertz wave source with electrical tunability, thereby facilitating its incorporation into ultrafast, broadband, and wireless communication technologies.
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Submitted 20 November, 2024;
originally announced November 2024.
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The track-length extension fitting algorithm for energy measurement of interacting particles in liquid argon TPCs and its performance with ProtoDUNE-SP data
Authors:
DUNE Collaboration,
A. Abed Abud,
B. Abi,
R. Acciarri,
M. A. Acero,
M. R. Adames,
G. Adamov,
M. Adamowski,
D. Adams,
M. Adinolfi,
C. Adriano,
A. Aduszkiewicz,
J. Aguilar,
F. Akbar,
N. S. Alex,
K. Allison,
S. Alonso Monsalve,
M. Alrashed,
A. Alton,
R. Alvarez,
T. Alves,
H. Amar,
P. Amedo,
J. Anderson,
C. Andreopoulos
, et al. (1348 additional authors not shown)
Abstract:
This paper introduces a novel track-length extension fitting algorithm for measuring the kinetic energies of inelastically interacting particles in liquid argon time projection chambers (LArTPCs). The algorithm finds the most probable offset in track length for a track-like object by comparing the measured ionization density as a function of position with a theoretical prediction of the energy los…
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This paper introduces a novel track-length extension fitting algorithm for measuring the kinetic energies of inelastically interacting particles in liquid argon time projection chambers (LArTPCs). The algorithm finds the most probable offset in track length for a track-like object by comparing the measured ionization density as a function of position with a theoretical prediction of the energy loss as a function of the energy, including models of electron recombination and detector response. The algorithm can be used to measure the energies of particles that interact before they stop, such as charged pions that are absorbed by argon nuclei. The algorithm's energy measurement resolutions and fractional biases are presented as functions of particle kinetic energy and number of track hits using samples of stopping secondary charged pions in data collected by the ProtoDUNE-SP detector, and also in a detailed simulation. Additional studies describe the impact of the dE/dx model on energy measurement performance. The method described in this paper to characterize the energy measurement performance can be repeated in any LArTPC experiment using stopping secondary charged pions.
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Submitted 26 December, 2024; v1 submitted 26 September, 2024;
originally announced September 2024.
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Data-driven quasiconformal morphodynamic flows
Authors:
Salem Mosleh,
Gary P. T. Choi,
L. Mahadevan
Abstract:
Temporal imaging of biological epithelial structures yields shape data at discrete time points, leading to a natural question: how can we reconstruct the most likely path of growth patterns consistent with these discrete observations? We present a physically plausible framework to solve this inverse problem by creating a framework that generalises quasiconformal maps to quasiconformal flows. By al…
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Temporal imaging of biological epithelial structures yields shape data at discrete time points, leading to a natural question: how can we reconstruct the most likely path of growth patterns consistent with these discrete observations? We present a physically plausible framework to solve this inverse problem by creating a framework that generalises quasiconformal maps to quasiconformal flows. By allowing for the spatio-temporal variation of the shear and dilatation fields during the growth process, subject to regulatory mechanisms, we are led to a type of generalised Ricci flow. When guided by observational data associated with surface shape as a function of time, this leads to a constrained optimization problem. Deploying our data-driven algorithmic approach to the shape of insect wings, leaves and even sculpted faces, we show how optimal quasiconformal flows allow us to characterise the morphogenesis of a range of surfaces.
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Submitted 19 July, 2024; v1 submitted 10 April, 2024;
originally announced April 2024.
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Inelastic collisions facilitating runaway electron generation in weakly-ionized plasmas
Authors:
Y. Lee,
P. Aleynikov,
P. C. de Vries,
H. -T. Kim,
J. Lee,
M. Hoppe,
J. -K. Park,
G. J. Choi,
J. Gwak,
Y. -S. Na
Abstract:
Dreicer generation is one of the main mechanisms of runaway electrons generation, in particular during tokamak startup. In fully ionized plasma it is described as a diffusive flow from the Maxwellian core into high energies under the effect of the electric field. In this work we demonstrate a critical role of the non-differential nature of inelastic collisions in weakly ionized plasma during tokam…
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Dreicer generation is one of the main mechanisms of runaway electrons generation, in particular during tokamak startup. In fully ionized plasma it is described as a diffusive flow from the Maxwellian core into high energies under the effect of the electric field. In this work we demonstrate a critical role of the non-differential nature of inelastic collisions in weakly ionized plasma during tokamak startup, where some electrons experience virtually no collisions during acceleration to the critical energy. We show that using the Fokker-Planck collisional operator can underestimate the Dreicer generation rate by several orders of magnitude.
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Submitted 23 April, 2024; v1 submitted 24 October, 2023;
originally announced October 2023.
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Helically-trapped electron mode in optimized stellarator
Authors:
Javier H Nicolau,
Xishuo Wei,
Pengfei Liu,
Gyungjin Choi,
Zhihong Lin
Abstract:
Global gyrokinetic simulations find a strong helically-trapped electron mode (HTEM) driven by density gradients in the optimized stellarator W7-X fusion experiment. The eigenmode structure localizes in the inner side of the torus with an unfavorable magnetic curvature and weak magnetic field, where there is a large fraction of helically-trapped electrons. The mode is excited mostly by the ion free…
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Global gyrokinetic simulations find a strong helically-trapped electron mode (HTEM) driven by density gradients in the optimized stellarator W7-X fusion experiment. The eigenmode structure localizes in the inner side of the torus with an unfavorable magnetic curvature and weak magnetic field, where there is a large fraction of helically-trapped electrons. The mode is excited mostly by the ion free energy and propagates in the ion direction with a linear frequency much smaller than the diamagnetic frequency. The instability saturates by nonlinear processes of turbulence spreading in the real space and spectral transfer from unstable to damped regions. The steady state HTEM turbulence drives a large particle flux that may have significant implications for the confinement of fusion fuel and removal of fusion ash in the stellarator reactor.
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Submitted 10 October, 2023;
originally announced October 2023.
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Optical and Raman spectroscopies of 171Yb3+:Y2SiO5 hyperfine structure for application toward microwave-to-optical transducer
Authors:
Hee-Jin Lim,
Ga-Hyun Choi,
Ki Suk Hong
Abstract:
This study analyzed the optical techniques for high resolution, low-noise spectroscopy of a hyperfine structure (HFS) made of ytterbium-isotope 171 ions ($^{171}\mathrm{Yb}^{3+}$:$\mathrm{Y}_2\mathrm{SiO}_5$). Large energy spacings in $^{171}\mathrm{Yb}^{3+}$ are advantageous for spin-state preparations of quantum memory and construction of a transducer, thereby promoting the simultaneous stable c…
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This study analyzed the optical techniques for high resolution, low-noise spectroscopy of a hyperfine structure (HFS) made of ytterbium-isotope 171 ions ($^{171}\mathrm{Yb}^{3+}$:$\mathrm{Y}_2\mathrm{SiO}_5$). Large energy spacings in $^{171}\mathrm{Yb}^{3+}$ are advantageous for spin-state preparations of quantum memory and construction of a transducer, thereby promoting the simultaneous stable control of the optical frequencies of lasers over a wide range of 3 GHz. We also built our own 2.7-K cryogenic system for optical, radio-wave-assisted spectroscopy. We attained to high resolution and sensitivity both in pump-probe saturation spectroscopy (PPS) and Raman heterodyne spectroscopy (RHS). Our frequency-stabilized PPS achieved a high-resolution spectrum of the HFS, whereas our setup of RHS enabled the efficient detection of paramagnetic spin resonance efficiently for a wide range of radio frequencies. As the underlying Raman process is an up-converting transduction, we present the optimization of the sensitivity of Raman heterodyne detections by selecting the best crystal orientation and efficient radio-wave coupling in future applications toward photon transducers.
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Submitted 20 August, 2024; v1 submitted 18 September, 2023;
originally announced September 2023.
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Impact of Stimulated Raman Scattering on Dark Soliton Generation in a Silica Microresonator
Authors:
Gwangho Choi,
Judith Su
Abstract:
Generating a coherent optical frequency comb at an arbitrary wavelength is important for fields such as spectroscopy and optical communications. Dark solitons which are coherent states of optical frequency combs in normal dispersion microresonators can extend the operating wavelength and be excited via intermodal coupling. They have been investigated over the last decade due to their high conversi…
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Generating a coherent optical frequency comb at an arbitrary wavelength is important for fields such as spectroscopy and optical communications. Dark solitons which are coherent states of optical frequency combs in normal dispersion microresonators can extend the operating wavelength and be excited via intermodal coupling. They have been investigated over the last decade due to their high conversion efficiency and deterministic excitation with no need for dispersion engineering. While the existence and dynamics of dark solitons has been examined extensively, requirements on the modal interaction for accessing the soliton state in the presence of a strong Raman interaction at near-IR wavelengths has been less explored. Here, analysis on the parametric and Raman gain in a silica microresonator is performed, revealing that parametric gain can be created by an additional frequency due to modal interaction and exceed the Raman gain. More complex interaction dynamics of the parametric and stimulated Raman scattering process is studied using numerical simulations based on the Lugiato-Lefever equation. It is found that exciting a dark soliton requires not only appropriate modal coupling but also a range of pump powers. The existence range of the dark soliton is analyzed as a function of pump power and detuning for given modal coupling conditions. We anticipate these results will benefit fields requiring optical frequency combs with high efficiency and selectable wavelength in a material with a strong Raman gain.
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Submitted 14 October, 2022;
originally announced October 2022.
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Pseudo-hydrodynamic flow of quasiparticles in semimetal WTe2 at room temperature
Authors:
Young-Gwan Choi,
Manh-Ha Doan,
Gyung-Min Choi,
Maxim N. Chernodub
Abstract:
Recently, much interest has emerged in fluid-like electric charge transport in various solid-state systems. The hydrodynamic behavior of the electronic fluid reveals itself as a decrease of the electrical resistance with increasing temperature (the Gurzhi effect) in narrow conducting channels, polynomial scaling of the resistance as a function of the channel width, substantial violation of the Wie…
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Recently, much interest has emerged in fluid-like electric charge transport in various solid-state systems. The hydrodynamic behavior of the electronic fluid reveals itself as a decrease of the electrical resistance with increasing temperature (the Gurzhi effect) in narrow conducting channels, polynomial scaling of the resistance as a function of the channel width, substantial violation of the Wiedemann-Franz law supported by the emergence of the Poiseuille flow. Similarly to whirlpools in flowing water, the viscous electronic flow generates vortices, resulting in abnormal sign-changing electrical response driven by the backflow of electrical current. Experimentally, the presence of the hydrodynamic vortices was observed in low-temperature graphene as a negative voltage drop near the current-injecting contacts. However, the question of whether the long-ranged sign-changing electrical response can be produced by a mechanism other than hydrodynamics has not been addressed so far. Here we use polarization-sensitive laser microscopy to demonstrate the emergence of visually similar abnormal sign-alternating patterns in charge density in multilayer tungsten ditelluride at room temperature where this material does not exhibit true electronic hydrodynamics. We argue that this pseudo-hydrodynamic behavior appears due to a subtle interplay between the diffusive transport of electrons and holes. In particular, the sign-alternating charge accumulation in WTe2 is supported by the unexpected backflow of compressible neutral electron-hole current, which creates charge-neutral whirlpools in the bulk of this nearly compensated semimetal. We demonstrate that the exceptionally large spatial size of the charge domains is sustained by the long recombination time of electron-hole pairs.
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Submitted 20 January, 2022;
originally announced January 2022.
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Optical Frequency Combs in Aqueous and Air Environments at Visible to Near-IR Wavelengths
Authors:
Gwangho Choi,
Adley Gin,
Judith Su
Abstract:
The ability to detect and identify molecules at high sensitivity without the use of labels or capture agents is important for medical diagnostics, threat identification, environmental monitoring, and basic science. Microtoroid optical resonators, when combined with noise reduction techniques, have been shown capable of label-free single molecule detection, however, they still require a capture age…
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The ability to detect and identify molecules at high sensitivity without the use of labels or capture agents is important for medical diagnostics, threat identification, environmental monitoring, and basic science. Microtoroid optical resonators, when combined with noise reduction techniques, have been shown capable of label-free single molecule detection, however, they still require a capture agent and prior knowledge of the target molecule. Optical frequency combs can potentially provide high precision spectroscopic information on molecules within the evanescent field of the microresonator; however, this has not yet been demonstrated in air or aqueous biological sensing. For aqueous solutions in particular, impediments include coupling and thermal instabilities, reduced Q factor, and changes to the mode spectrum. Here we overcome a key challenge toward single-molecule spectroscopy using optical microresonators: the generation of a frequency comb at visible to near-IR wavelengths when immersed in either air or aqueous solution. The required dispersion is achieved via intermodal coupling, which we show is attainable using larger microtoroids, but with the same shape and material that has previously been shown ideal for ultra-high sensitivity biosensing. We believe that the continuous evolution of this platform will allow us in the future to simultaneously detect and identify single molecules in both gas and liquid at any wavelength without the use of labels.
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Submitted 7 January, 2022;
originally announced January 2022.
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Verification and validation of gyrokinetic and kinetic-MHD simulations for internal kink instability in DIII-D tokamak
Authors:
G. Brochard,
J. Bao,
C. Liu,
N. Gorelenkov,
G. Choi,
G. Dong,
P. Liu,
J. Mc. Clenaghan,
J. H. Nicolau,
F. Wang,
W. H. Wang,
X. Wei,
W. L. Zhang,
W. Heidbrink,
J. P. Graves,
Z. Lin,
H. Lütjens
Abstract:
Verification and validation of the internal kink instability in tokamak have been performed for both gyrokinetic (GTC) and kinetic-MHD codes (GAM-solver, M3D-C1-K, NOVA, XTOR-K). Using realistic magnetic geometry and plasma profiles from the same equilibrium reconstruction of the DIII-D shot #141216, these codes exhibit excellent agreement for the growth rate and mode structure of the internal kin…
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Verification and validation of the internal kink instability in tokamak have been performed for both gyrokinetic (GTC) and kinetic-MHD codes (GAM-solver, M3D-C1-K, NOVA, XTOR-K). Using realistic magnetic geometry and plasma profiles from the same equilibrium reconstruction of the DIII-D shot #141216, these codes exhibit excellent agreement for the growth rate and mode structure of the internal kink mode when all kinetic effects are suppresed. The simulated radial mode structures agree quantitatively with the electron cyclotron emission measurement after adjusting, within the experimental uncertainty, the safety factor q=1 flux-surface location in the equilibrium reconstruction. Compressible magnetic perturbations strongly destabilize the kink, while poloidal variations of the equilibrium current density reduce the growth rate of the kink. Furthermore, kinetic effects of thermal ions are found to decrease the kink growth rate in kinetic-MHD simulations, but increase the kink growth rate in gyrokinetic simulations, due to the additional drive of the ion temperature gradient and parallel electric field. Kinetic thermal electrons are found to have negligible effects on the internal kink instability.
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Submitted 20 September, 2021;
originally announced September 2021.
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Formulation and verification of multiscale gyrokinetic simulation of kinetic-MHD processes in toroidal plasmas
Authors:
Xishuo Wei,
Pengfei Liu,
Gyungjin Choi,
Guillaume Brochard,
Jian Bao,
Javier H Nicolau,
Yuehao Ma,
Haotian Chen,
Handi Huang,
Shuying Sun,
Yangyang Yu,
Ethan Green,
Fernando Eizaguirre,
Zhihong Lin
Abstract:
A comprehensive gyrokinetic simulation model has been implemented in the global toroidal gyrokinetic code (GTC) and verified for studying low-frequency waves and turbulence in magnetic fusion plasmas by treating all kinetic-MHD processes on an equal footing. A theoretical framework has been formulated to unify various methods for efficiently solving the electron drift kinetic equation in multiscal…
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A comprehensive gyrokinetic simulation model has been implemented in the global toroidal gyrokinetic code (GTC) and verified for studying low-frequency waves and turbulence in magnetic fusion plasmas by treating all kinetic-MHD processes on an equal footing. A theoretical framework has been formulated to unify various methods for efficiently solving the electron drift kinetic equation in multiscale simulations by separating electron responses into analytic and non-analytic parts based on the smallness parameter of electron-to-ion mass ratio. The model can be reduced to the ideal MHD model with both the linear dispersion relation and the nonlinear ponderomotive force in theory and simulation. The model is used for the verification and validation of simulating internal kink modes in the DIII-D tokamak with accurate calculations of equilibrium parallel current and compressible magnetic perturbation. A large simulation database has been generated to train a surrogate model to predict the kink instability. Statistical analysis shows that the radial location of safety factor q=1 flux-surface and the plasma beta inside the q=1 surface are the most important parameters for predicting the kink instability.
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Submitted 7 April, 2026; v1 submitted 18 September, 2021;
originally announced September 2021.
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Quasicrystal kirigami
Authors:
Lucy Liu,
Gary P. T. Choi,
L. Mahadevan
Abstract:
Kirigami, the art of introducing cuts in thin sheets to enable articulation and deployment, has become an inspiration for a novel class of mechanical metamaterials with unusual properties. Here we complement the use of periodic tiling patterns for kirigami designs by showing that quasicrystals can also serve as the basis for designing deployable kirigami structures, and analyze the geometrical, to…
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Kirigami, the art of introducing cuts in thin sheets to enable articulation and deployment, has become an inspiration for a novel class of mechanical metamaterials with unusual properties. Here we complement the use of periodic tiling patterns for kirigami designs by showing that quasicrystals can also serve as the basis for designing deployable kirigami structures, and analyze the geometrical, topological and mechanical properties of these aperiodic kirigami structures.
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Submitted 20 April, 2022; v1 submitted 27 April, 2021;
originally announced April 2021.
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Nonlinear optical Hall effect in Weyl semimetal WTe2
Authors:
Young-Gwan Choi,
Manh-Ha Doan,
Youngkuk Kim,
Gyung-Min Choi
Abstract:
The ordinary Hall effect refers to generation of a transverse voltage upon exertion of an electric field in the presence of an out-of-plane magnetic field. While a linear Hall effect is commonly observed in systems with breaking time-reversal symmetry via an applied external magnetic field or their intrinsic magnetization1, 2, a nonlinear Hall effect can generically occur in non-magnetic systems a…
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The ordinary Hall effect refers to generation of a transverse voltage upon exertion of an electric field in the presence of an out-of-plane magnetic field. While a linear Hall effect is commonly observed in systems with breaking time-reversal symmetry via an applied external magnetic field or their intrinsic magnetization1, 2, a nonlinear Hall effect can generically occur in non-magnetic systems associated with a nonvanishing Berry curvature dipole3. Here we report, observations of a nonlinear optical Hall effect in a Weyl semimetal WTe2 without an applied magnetic field at room temperature. We observe an optical Hall effect resulting in a polarization rotation of the reflected light, referred to as the nonlinear Kerr rotation. The nonlinear Kerr rotation linearly depends on the charge current and optical power, which manifests the fourth-order nonlinearity. We quantitatively determine the fourth-order susceptibility, which exhibits strong anisotropy depending on the directions of the charge current and the light polarization. Employing symmetry analysis of Berry curvature multipoles, we demonstrate that the nonlinear Kerr rotations can arise from the Berry curvature hexapole allowed by the crystalline symmetries of WTe2. There also exist marginal signals that are incompatible with the symmetries, which suggest a hidden phase associated with the nonlinear process.
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Submitted 15 March, 2021;
originally announced March 2021.
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Wallpaper group kirigami
Authors:
Lucy Liu,
Gary P. T. Choi,
L. Mahadevan
Abstract:
Kirigami, the art of paper cutting, has become a paradigm for mechanical metamaterials in recent years. The basic building blocks of any kirigami structures are repetitive deployable patterns that derive inspiration from geometric art forms and simple planar tilings. Here we complement these approaches by directly linking kirigami patterns to the symmetry associated with the set of seventeen repea…
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Kirigami, the art of paper cutting, has become a paradigm for mechanical metamaterials in recent years. The basic building blocks of any kirigami structures are repetitive deployable patterns that derive inspiration from geometric art forms and simple planar tilings. Here we complement these approaches by directly linking kirigami patterns to the symmetry associated with the set of seventeen repeating patterns that fully characterize the space of periodic tilings of the plane. We start by showing how to construct deployable kirigami patterns using any of the wallpaper groups, and then design symmetry-preserving cut patterns to achieve arbitrary size changes via deployment. We further prove that different symmetry changes can be achieved by controlling the shape and connectivity of the tiles and connect these results to the underlying kirigami-based lattice structures. All together, our work provides a systematic approach for creating a broad range of kirigami-based deployable structures with any prescribed size and symmetry properties.
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Submitted 4 July, 2021; v1 submitted 21 February, 2021;
originally announced February 2021.
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Learning hydrodynamic equations for active matter from particle simulations and experiments
Authors:
Rohit Supekar,
Boya Song,
Alasdair Hastewell,
Gary P. T. Choi,
Alexander Mietke,
Jörn Dunkel
Abstract:
Recent advances in high-resolution imaging techniques and particle-based simulation methods have enabled the precise microscopic characterization of collective dynamics in various biological and engineered active matter systems. In parallel, data-driven algorithms for learning interpretable continuum models have shown promising potential for the recovery of underlying partial differential equation…
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Recent advances in high-resolution imaging techniques and particle-based simulation methods have enabled the precise microscopic characterization of collective dynamics in various biological and engineered active matter systems. In parallel, data-driven algorithms for learning interpretable continuum models have shown promising potential for the recovery of underlying partial differential equations (PDEs) from continuum simulation data. By contrast, learning macroscopic hydrodynamic equations for active matter directly from experiments or particle simulations remains a major challenge. Here, we present a framework that leverages spectral basis representations and sparse regression algorithms to discover PDE models from microscopic simulation and experimental data, while incorporating the relevant physical symmetries. We illustrate the practical potential through applications to a chiral active particle model mimicking swimming cells and to recent microroller experiments. In both cases, our scheme learns hydrodynamic equations that reproduce quantitatively the self-organized collective dynamics observed in the simulations and experiments. This inference framework makes it possible to measure a large number of hydrodynamic parameters in parallel and directly from video data.
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Submitted 23 November, 2021; v1 submitted 16 January, 2021;
originally announced January 2021.
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Compact reconfigurable kirigami
Authors:
Gary P. T. Choi,
Levi H. Dudte,
L. Mahadevan
Abstract:
Kirigami involves cutting a flat, thin sheet that allows it to morph from a closed, compact configuration into an open deployed structure via coordinated rotations of the internal tiles. By recognizing and generalizing the geometric constraints that enable this art form, we propose a design framework for compact reconfigurable kirigami patterns, which can morph from a closed and compact configurat…
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Kirigami involves cutting a flat, thin sheet that allows it to morph from a closed, compact configuration into an open deployed structure via coordinated rotations of the internal tiles. By recognizing and generalizing the geometric constraints that enable this art form, we propose a design framework for compact reconfigurable kirigami patterns, which can morph from a closed and compact configuration into a deployed state conforming to any prescribed target shape, and subsequently be contracted into a different closed and compact configuration. We further establish a condition for producing kirigami patterns which are reconfigurable and rigid deployable allowing us to connect the compact states via a zero-energy family of deployed states. All together, our inverse design framework lays out a new path for the creation of shape-morphing material structures.
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Submitted 16 December, 2020;
originally announced December 2020.
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Calibration-free quantitative phase imaging using data-driven aberration modeling
Authors:
Taean Chang,
Youngju Jo,
Gunho Choi,
Donghun Ryu,
Hyun-Seok Min,
Yongkeun Park
Abstract:
We present a data-driven approach to compensate for optical aberration in calibration-free quantitative phase imaging (QPI). Unlike existing methods that require additional measurements or a background region to correct aberrations, we exploit deep learning techniques to model the physics of aberration in an imaging system. We demonstrate the generation of a single-shot aberration-corrected field…
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We present a data-driven approach to compensate for optical aberration in calibration-free quantitative phase imaging (QPI). Unlike existing methods that require additional measurements or a background region to correct aberrations, we exploit deep learning techniques to model the physics of aberration in an imaging system. We demonstrate the generation of a single-shot aberration-corrected field image by using a U-net-based deep neural network that learns a translation between an optical field with aberrations and an aberration-corrected field. The high fidelity of our method is demonstrated on 2D and 3D QPI measurements of various confluent eukaryotic cells, benchmarking against the conventional method using background subtractions.
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Submitted 25 July, 2020;
originally announced July 2020.
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Self-excited motions of volatile drops on swellable sheets
Authors:
Aditi Chakrabarti,
Gary P. T. Choi,
L. Mahadevan
Abstract:
When a volatile droplet is deposited on a floating swellable sheet, it becomes asymmetric, lobed and mobile. We describe and quantify this phenomena that involves nonequilibrium swelling, evaporation and motion, working together to realize a self-excitable spatially extended oscillator. Solvent penetration causes the film to swell locally and eventually buckle, changing its shape and the drop resp…
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When a volatile droplet is deposited on a floating swellable sheet, it becomes asymmetric, lobed and mobile. We describe and quantify this phenomena that involves nonequilibrium swelling, evaporation and motion, working together to realize a self-excitable spatially extended oscillator. Solvent penetration causes the film to swell locally and eventually buckle, changing its shape and the drop responds by moving. Simultaneously, solvent evaporation from the swollen film causes it to regain its shape once the droplet has moved away. The process repeats and leads to complex pulsatile spinning and/or sliding movements. We use a one-dimensional experiment to highlight the slow swelling of and evaporation from the film and the fast motion of the drop, a characteristic of excitable systems. Finally, we provide a phase diagram for droplet excitability as a function of drop size and film thickness and scaling laws for the motion of the droplet.
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Submitted 25 June, 2020; v1 submitted 15 October, 2019;
originally announced October 2019.
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Area-preserving mapping of 3D ultrasound carotid artery images using density-equalizing reference map
Authors:
Gary P. T. Choi,
Bernard Chiu,
Chris H. Rycroft
Abstract:
Carotid atherosclerosis is a focal disease at the bifurcations of the carotid artery. To quantitatively monitor the local changes in the vessel-wall-plus-plaque thickness (VWT) and compare the VWT distributions for different patients or for the same patients at different ultrasound scanning sessions, a mapping technique is required to adjust for the geometric variability of different carotid arter…
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Carotid atherosclerosis is a focal disease at the bifurcations of the carotid artery. To quantitatively monitor the local changes in the vessel-wall-plus-plaque thickness (VWT) and compare the VWT distributions for different patients or for the same patients at different ultrasound scanning sessions, a mapping technique is required to adjust for the geometric variability of different carotid artery models. In this work, we propose a novel method called density-equalizing reference map (DERM) for mapping 3D carotid surfaces to a standardized 2D carotid template, with an emphasis on preserving the local geometry of the carotid surface by minimizing the local area distortion. The initial map was generated by a previously described arc-length scaling (ALS) mapping method, which projects a 3D carotid surface onto a 2D non-convex L-shaped domain. A smooth and area-preserving flattened map was subsequently constructed by deforming the ALS map using the proposed algorithm that combines the density-equalizing map and the reference map techniques. This combination allows, for the first time, one-to-one mapping from a 3D surface to a standardized non-convex planar domain in an area-preserving manner. Evaluations using 20 carotid surface models show that the proposed method reduced the area distortion of the flattening maps by over 80% as compared to the ALS mapping method.
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Submitted 9 December, 2018;
originally announced December 2018.
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Deep learning approach to coherent noise reduction in optical diffraction tomography
Authors:
Gunho Choi,
Donghun Ryu,
Youngju Jo,
Youngseo Kim,
Weisun Park,
Hyun-Seok Min,
Yongkeun Park
Abstract:
We present a deep neural network to reduce coherent noise in three-dimensional quantitative phase imaging. Inspired by the cycle generative adversarial network, the denoising network was trained to learn a transform between two image domains: clean and noisy refractive index tomograms. The unique feature of this network, distinct from previous machine learning approaches employed in the optical im…
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We present a deep neural network to reduce coherent noise in three-dimensional quantitative phase imaging. Inspired by the cycle generative adversarial network, the denoising network was trained to learn a transform between two image domains: clean and noisy refractive index tomograms. The unique feature of this network, distinct from previous machine learning approaches employed in the optical imaging problem, is that it uses unpaired images. The learned network quantitatively demonstrated its performance and generalization capability through denoising experiments of various samples. We concluded by applying our technique to reduce the temporally changing noise emerging from focal drift in time-lapse imaging of biological cells. This reduction cannot be performed using other optical methods for denoising.
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Submitted 16 November, 2018;
originally announced November 2018.
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Quantitative Phase Imaging and Artificial Intelligence: A Review
Authors:
YoungJu Jo,
Hyungjoo Cho,
Sang Yun Lee,
Gunho Choi,
Geon Kim,
Hyun-seok Min,
YongKeun Park
Abstract:
Recent advances in quantitative phase imaging (QPI) and artificial intelligence (AI) have opened up the possibility of an exciting frontier. The fast and label-free nature of QPI enables the rapid generation of large-scale and uniform-quality imaging data in two, three, and four dimensions. Subsequently, the AI-assisted interrogation of QPI data using data-driven machine learning techniques result…
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Recent advances in quantitative phase imaging (QPI) and artificial intelligence (AI) have opened up the possibility of an exciting frontier. The fast and label-free nature of QPI enables the rapid generation of large-scale and uniform-quality imaging data in two, three, and four dimensions. Subsequently, the AI-assisted interrogation of QPI data using data-driven machine learning techniques results in a variety of biomedical applications. Also, machine learning enhances QPI itself. Herein, we review the synergy between QPI and machine learning with a particular focus on deep learning. Further, we provide practical guidelines and perspectives for further development.
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Submitted 13 July, 2018; v1 submitted 6 June, 2018;
originally announced June 2018.
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Assembly of 3D plasmonic metamolecules by 2D AFM nanomanipulation of highly uniform and smooth gold nanospheres
Authors:
Kyung Jin Park,
Ji-Hyeok Huh,
Dae-Woong Jung,
Jin-Sung Park,
Gwan H. Choi,
Gaehang Lee,
Pil J. Yoo,
Hong-Gyu Park,
Gi-Ra Yi,
Seungwoo Lee
Abstract:
Atomic force microscopy (AFM) nanomanipulation has been viewed as a deterministic method for the assembly of plasmonic metamolecules because it enables unprecedented engineering of clusters with exquisite control over particle number and geometry. Nevertheless, the dimensionality of plasmonic metamolecules via AFM nanomanipulation is limited to 2D, so as to restrict the design space of available a…
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Atomic force microscopy (AFM) nanomanipulation has been viewed as a deterministic method for the assembly of plasmonic metamolecules because it enables unprecedented engineering of clusters with exquisite control over particle number and geometry. Nevertheless, the dimensionality of plasmonic metamolecules via AFM nanomanipulation is limited to 2D, so as to restrict the design space of available artificial electromagnetisms. Here, we show that 2D nanomanipulation of the AFM tip can be used to assemble 3D plasmonic metamolecules in a versatile and deterministic way by dribbling highly spherical and smooth gold nanospheres (NSs) on a nanohole template rather than on a flat surface. Various 3D plasmonic clusters with controlled symmetry were successfully assembled with nanometer precision, the relevant 3D plasmonic modes (i.e., artificial magnetism and magnetic-based Fano resonance) were fully rationalized by both numerical calculation and dark-field spectroscopy. This templating strategy for advancing AFM nanomanipulation can be generalized to exploit the fundamental understanding of various electromagnetic 3D couplings and can serve as the basis for the design of metamolecules, metafluids, and metamaterials.
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Submitted 25 March, 2017;
originally announced March 2017.