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Showing 1–26 of 26 results for author: Safari, M

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  1. arXiv:2608.10170  [pdf, ps, other

    cs.CV physics.med-ph

    Motion Artifact-Aware Self-Supervised Representation Learning for 3D Brain MRI Motion Artifact Reduction

    Authors: Mojtaba Safari, Shansong Wang, Zach Eidex, Matthew Goette, Tonghe Wang, Zhen Tian, Xiaofeng Yang

    Abstract: Patient motion remains a source of image degradation in brain MRI, leading to signal loss, blurring, and geometric distortion that compromise quantitative analysis. Existing deep learning methods for motion correction typically rely on paired clean-corrupted data or k-space acquisitions, which are rarely available in clinical settings. We propose SSRL-MAR, a motion artifact-aware unpaired represen… ▽ More

    Submitted 10 August, 2026; originally announced August 2026.

  2. arXiv:2608.08819  [pdf, ps, other

    cs.CV physics.med-ph

    MRI super-resolution in ten sampling steps using a diffusion bridge model

    Authors: Mojtaba Safari, Hang Yu, Zach Eidex, Mingzhe Hu, Ryan J. Sanford, Alexandru Florea, Shansong Wang, Chih-Wei Chang, Erik H Middlebrooks, Aditya Juloori, Stanley L. Liauw, Ralph Weichselbaum, Xiaofeng Yang

    Abstract: Objective. MRI provides excellent soft-tissue contrast, but long acquisition times can cause patient discomfort and lead to motion artifacts, forcing a trade-off between spatial resolution and scan time. Diffusion-based super-resolution (SR) reconstructs high-resolution (HR) images from low-resolution (LR) inputs, but typically needs many sampling steps and initializes from a Gaussian prior ill-su… ▽ More

    Submitted 9 August, 2026; originally announced August 2026.

  3. arXiv:2607.14870  [pdf, ps, other

    physics.med-ph

    One-for-All Adaptive Radiotherapy Planning Agent: A Foundation Framework for Daily CBCT-guided Radiotherapy

    Authors: Shaoyan Pan, Kirk Jon Luca, Yuan Gao, Shansong Wang, Mingzhe Hu, Ryan Sanford, Mojtaba Safari, Justin Roper, Zhen Tian, Tonghe Wang, Xiaofeng Yang

    Abstract: In this work, we introduce the One-for-All Adaptive Radiotherapy Planning Agent, a unified foundation-model-based system that performs complete, treatment-specific online adaptive planning directly from daily cone-beam CT in under two minutes. The agent first autonomously predicts all essential planning components, including synthetic CT generation, multimodal alignment, and tumor/organ segmentati… ▽ More

    Submitted 16 July, 2026; originally announced July 2026.

  4. arXiv:2606.00859  [pdf, ps, other

    physics.flu-dyn

    Disentangling spanwise asymmetries in unsteady wing wakes: global mode sensitivity and spatio-temporal harmonic resolvent analyses

    Authors: Maryam Safari, Chi-An Yeh

    Abstract: We investigate the emergence of long-time spanwise asymmetries in an unsteady wake downstream of a finite-span wing by disentangling flow asymmetries into symmetric and anti-symmetric components using global mode (structural) sensitivity and spatio-temporal harmonic resolvent analysis. The global mode sensitivity analysis shows that asymmetric modes emerge when symmetric and anti-symmetric eigenmo… ▽ More

    Submitted 30 May, 2026; originally announced June 2026.

    Comments: 32 pages, 18 figures

  5. arXiv:2512.19676  [pdf, ps, other

    cs.CV physics.med-ph

    Efficient Vision Mamba for MRI Super-Resolution via Hybrid Selective Scanning

    Authors: Mojtaba Safari, Shansong Wang, Vanessa L Wildman, Mingzhe Hu, Zach Eidex, Chih-Wei Chang, Erik H Middlebrooks, Richard L. J Qiu, Pretesh Patel, Ashesh B. Jani, Hui Mao, Zhen Tian, Xiaofeng Yang

    Abstract: Background: High-resolution MRI is critical for diagnosis, but long acquisition times limit clinical use. Super-resolution (SR) can enhance resolution post-scan, yet existing deep learning methods face fidelity-efficiency trade-offs. Purpose: To develop a computationally efficient and accurate deep learning framework for MRI SR that preserves anatomical detail for clinical integration. Materials a… ▽ More

    Submitted 7 March, 2026; v1 submitted 22 December, 2025; originally announced December 2025.

  6. arXiv:2510.23859  [pdf

    physics.med-ph

    Low-Dose CT Imaging Using a Regularization-Enhanced Efficient Diffusion Probabilistic Model

    Authors: Qiang Li, Mojtaba Safari, Shansong Wang, Huiqiao Xie, Jie Ding, Tonghe Wang, Xiaofeng Yang

    Abstract: Low-dose computed tomography (LDCT) reduces patient radiation exposure but introduces substantial noise that degrades image quality and hinders diagnostic accuracy. Existing denoising approaches often require many diffusion steps, limiting real-time applicability. We propose a Regularization-Enhanced Efficient Diffusion Probabilistic Model (RE-EDPM), a rapid and high-fidelity LDCT denoising framew… ▽ More

    Submitted 27 October, 2025; originally announced October 2025.

  7. arXiv:2510.16973  [pdf

    cs.CV cs.AI physics.med-ph

    Foundation Models in Medical Image Analysis: A Systematic Review and Meta-Analysis

    Authors: Praveenbalaji Rajendran, Mojtaba Safari, Wenfeng He, Mingzhe Hu, Shansong Wang, Jun Zhou, Xiaofeng Yang

    Abstract: Recent advancements in artificial intelligence (AI), particularly foundation models (FMs), have revolutionized medical image analysis, demonstrating strong zero- and few-shot performance across diverse medical imaging tasks, from segmentation to report generation. Unlike traditional task-specific AI models, FMs leverage large corpora of labeled and unlabeled multimodal datasets to learn generalize… ▽ More

    Submitted 19 October, 2025; originally announced October 2025.

  8. arXiv:2509.05071  [pdf, ps, other

    cs.CV physics.med-ph

    Systematic Review and Meta-analysis of AI-driven MRI Motion Artifact Detection and Correction

    Authors: Mojtaba Safari, Zach Eidex, Richard L. J. Qiu, Matthew Goette, Tonghe Wang, Xiaofeng Yang

    Abstract: Background: To systematically review and perform a meta-analysis of artificial intelligence (AI)-driven methods for detecting and correcting magnetic resonance imaging (MRI) motion artifacts, assessing current developments, effectiveness, challenges, and future research directions. Methods: A comprehensive systematic review and meta-analysis were conducted, focusing on deep learning (DL) approache… ▽ More

    Submitted 5 September, 2025; originally announced September 2025.

  9. arXiv:2505.03498  [pdf, ps, other

    cs.CV physics.med-ph

    Res-MoCoDiff: Residual-guided diffusion models for motion artifact correction in brain MRI

    Authors: Mojtaba Safari, Shansong Wang, Qiang Li, Zach Eidex, Richard L. J. Qiu, Chih-Wei Chang, Hui Mao, Xiaofeng Yang

    Abstract: Objective. Motion artifacts in brain MRI, mainly from rigid head motion, degrade image quality and hinder downstream applications. Conventional methods to mitigate these artifacts, including repeated acquisitions or motion tracking, impose workflow burdens. This study introduces Res-MoCoDiff, an efficient denoising diffusion probabilistic model specifically designed for MRI motion artifact correct… ▽ More

    Submitted 4 September, 2025; v1 submitted 6 May, 2025; originally announced May 2025.

  10. arXiv:2503.01576  [pdf, other

    cs.CV physics.med-ph

    MRI super-resolution reconstruction using efficient diffusion probabilistic model with residual shifting

    Authors: Mojtaba Safari, Shansong Wang, Zach Eidex, Qiang Li, Erik H. Middlebrooks, David S. Yu, Xiaofeng Yang

    Abstract: Objective:This study introduces a residual error-shifting mechanism that drastically reduces sampling steps while preserving critical anatomical details, thus accelerating MRI reconstruction. Approach:We propose a novel diffusion-based SR framework called Res-SRDiff, which integrates residual error shifting into the forward diffusion process. This enables efficient HR image reconstruction by align… ▽ More

    Submitted 26 April, 2025; v1 submitted 3 March, 2025; originally announced March 2025.

  11. arXiv:2502.09296  [pdf, other

    cs.CV physics.med-ph

    A Physics-Informed Deep Learning Model for MRI Brain Motion Correction

    Authors: Mojtaba Safari, Shansong Wang, Zach Eidex, Richard Qiu, Chih-Wei Chang, David S. Yu, Xiaofeng Yang

    Abstract: Background: MRI is crucial for brain imaging but is highly susceptible to motion artifacts due to long acquisition times. This study introduces PI-MoCoNet, a physics-informed motion correction network that integrates spatial and k-space information to remove motion artifacts without explicit motion parameter estimation, enhancing image fidelity and diagnostic reliability. Materials and Methods: PI… ▽ More

    Submitted 13 February, 2025; originally announced February 2025.

  12. arXiv:2501.14158  [pdf, other

    cs.CV cs.AI physics.med-ph

    Advancing MRI Reconstruction: A Systematic Review of Deep Learning and Compressed Sensing Integration

    Authors: Mojtaba Safari, Zach Eidex, Chih-Wei Chang, Richard L. J. Qiu, Xiaofeng Yang

    Abstract: Magnetic resonance imaging (MRI) is a non-invasive imaging modality and provides comprehensive anatomical and functional insights into the human body. However, its long acquisition times can lead to patient discomfort, motion artifacts, and limiting real-time applications. To address these challenges, strategies such as parallel imaging have been applied, which utilize multiple receiver coils to s… ▽ More

    Submitted 1 February, 2025; v1 submitted 23 January, 2025; originally announced January 2025.

    Comments: arXiv admin note: substantial text overlap with arXiv:2405.00241

  13. arXiv:2501.08414  [pdf, other

    physics.flu-dyn

    Duty-cycle actuation for drag reduction of deep dynamic stall: Insights from linear stability analysis

    Authors: Lucas Feitosa de Souza, William Roberto Wolf, Maryam Safari, Chi-An Yeh

    Abstract: A flow control framework based on linear stability analysis is proposed focusing on reducing the aerodynamic drag due to dynamic stall through a finite-window temporal actuation. The methodology is applied on a periodically plunging SD7003 airfoil.Finite-time Lyapunov exponent (FTLE) fields reveal a saddle point near the airfoil leading edge, where a shear layer forms and feeds a dynamic stall vor… ▽ More

    Submitted 14 January, 2025; originally announced January 2025.

    Comments: 23 pages, 10 figures

  14. Fast MRI Reconstruction Using Deep Learning-based Compressed Sensing: A Systematic Review

    Authors: Mojtaba Safari, Zach Eidex, Chih-Wei Chang, Richard L. J. Qiu, Xiaofeng Yang

    Abstract: Magnetic resonance imaging (MRI) has revolutionized medical imaging, providing a non-invasive and highly detailed look into the human body. However, the long acquisition times of MRI present challenges, causing patient discomfort, motion artifacts, and limiting real-time applications. To address these challenges, researchers are exploring various techniques to reduce acquisition time and improve t… ▽ More

    Submitted 30 April, 2024; originally announced May 2024.

  15. arXiv:2311.15044  [pdf

    physics.med-ph

    High-resolution 3T to 7T MRI Synthesis with a Hybrid CNN-Transformer Model

    Authors: Zach Eidex, Jing Wang, Mojtaba Safari, Eric Elder, Jacob Wynne, Tonghe Wang, Hui-Kuo Shu, Hui Mao, Xiaofeng Yang

    Abstract: 7 Tesla (7T) apparent diffusion coefficient (ADC) maps derived from diffusion-weighted imaging (DWI) demonstrate improved image quality and spatial resolution over 3 Tesla (3T) ADC maps. However, 7T magnetic resonance imaging (MRI) currently suffers from limited clinical unavailability, higher cost, and increased susceptibility to artifacts. To address these issues, we propose a hybrid CNN-transfo… ▽ More

    Submitted 25 November, 2023; originally announced November 2023.

  16. arXiv:2311.02511  [pdf

    cs.NI eess.SP physics.optics quant-ph

    EU COST Action on future generation optical wireless communication technologies, 2nd White paper

    Authors: Z. Ghassemlooy, M. A. Khalighi, S. Zvanovec, A. Shrestha, B. Ortega, M. Petkovic, X. Pang, C. Sirtori, D. Orsucci, A. Shrestha, F. Moll, G. Cossu, V. Spirito, M. P. Ninos, E. Ciaramella, J. Bas, M. Amay, S. Huang, M. Safari, T. Gutema, W. Popoola, Vicente Matus, Jose Rabadan, Rafael Perez-Jimenez, E. Panayirci , et al. (3 additional authors not shown)

    Abstract: NEWFOCUS is an EU COST Action targeted at exploring radical solutions that could influence the design of future wireless networks. The project aims to address some of the challenges associated with optical wireless communication (OWC) and to establish it as a complementary technology to the radio frequency (RF)-based wireless systems in order to meet the demanding requirements of the fifth generat… ▽ More

    Submitted 14 June, 2023; originally announced November 2023.

  17. arXiv:2206.08256  [pdf, ps, other

    cond-mat.mtrl-sci physics.chem-ph

    Growing borophene on metal substrates: a theoretical study of the role of oxygen on Al(111)

    Authors: Mandana Safari, Erik Vesselli, Stefano de Gironcoli, Stefano Baroni

    Abstract: Charge transfer from a metal substrate stabilizes honeycomb borophene, whose electron deficit would otherwise spoil the hexagonal order of a $π$-bonded 2D atomic network. However, the coupling between the substrate and the boron overlayer may result in the formation of strong chemical bonds that would compromise the electronic properties of the overlayer. In this paper we present a theoretical stu… ▽ More

    Submitted 31 October, 2022; v1 submitted 16 June, 2022; originally announced June 2022.

  18. arXiv:2101.06238  [pdf, other

    physics.app-ph physics.optics

    Multi-functional Metasurface: Visibly and RF Transparent, NIR Control and Low Thermal Emissivity

    Authors: Mahdi Safari, Nazir P. Kherani, George V. Eleftheriades

    Abstract: Rapid advances in metamaterial technology are enabling the engineering of wave-matter interactions heretofore not realized and functionalities with potentially far-reaching implications for major challenges in the fields of energy conservation and radio frequency (RF) communication. We propose a visibly and RF transparent composite metasurface utilizing dielectric-metal spectrally selective coatin… ▽ More

    Submitted 15 January, 2021; originally announced January 2021.

    Comments: 38 Pages, 16 figures

  19. Illusion Mechanisms with Cylindrical Metasurfaces: A General Synthesis Approach

    Authors: Mahdi Safari, Hamidreza Kazemi, Ali Abdolali, Mohammad Albooyeh, Filippo Capolino

    Abstract: We explore the use of cylindrical metasurfaces in providing several illusion mechanisms including scattering cancellation and creating fictitious line sources. We present the general synthesis approach that leads to such phenomena by modeling the metasurface with effective polarizability tensors and by applying boundary conditions to connect the tangential components of the desired fields to the r… ▽ More

    Submitted 20 May, 2019; originally announced May 2019.

    Comments: 12 pages, 9 figures

    Journal ref: Phys. Rev. B 100, 165418 (2019)

  20. Asymmetric Metal-dielectric Meta-cylinders and their Potential Applications from Engineering Scattering Patterns to Spatial Optical Signal Processing

    Authors: Ali Momeni, Mahdi Safari, Ali Abdolali, Nazir P. Kherani, Romain Fleury

    Abstract: We propose a novel type of bi-anisotropic hybrid metal-dielectric structure comprising dielectric and metallic cylindrical wedges wherein the composite meta-cylinder enables advanced control of electric, magnetic and magnetoelectric resonances. We establish a theoretical framework in which the electromagnetic response of this meta-atom is described through the electric and magneticmultipole moment… ▽ More

    Submitted 6 August, 2020; v1 submitted 8 April, 2019; originally announced April 2019.

    Comments: 16 pages, 10 figures

    Journal ref: Phys. Rev. Applied 15, 034010 (2021)

  21. arXiv:1902.05254  [pdf

    physics.optics physics.app-ph

    Design of a Broadband and Polarization Insensitive THz Absorber Based on Two Layers of Periodic Arrays of Graphene Disks

    Authors: Omid Mohsen Daraei, Mohammad Eskandari, Kiyanoush Goudarzi, Mir Mahdi Safari, Mohammad Bemani

    Abstract: In this paper, we analytically design a simple configuration of a broadband THz and polarization-insensitive absorber. The mentioned absorber consists of two layers of graphene disks, and the transmission line model is considered for the whole of the proposed absorber's structure to design it accurately. Therefore, the input admittance of the designed absorber is obtained by the transmission line… ▽ More

    Submitted 18 December, 2020; v1 submitted 14 February, 2019; originally announced February 2019.

  22. arXiv:1712.09280  [pdf, other

    physics.class-ph physics.comp-ph physics.optics

    A novel analytical method for analysis of electromagnetic scattering from inhomogeneous spherical structures using duality principles

    Authors: Mohammad Kiani, Ali Abdolali, Mahdi Safari

    Abstract: In this article, a novel analytical approach is presented for the analysis of electromagnetic (EM) scattering from radially inhomogeneous spherical structures (RISSs) based on the duality principle. According to the spherical symmetry, similar angular dependencies in all the regions are considered using spherical harmonics. To extract the radial dependency, the system of differential equations of… ▽ More

    Submitted 29 November, 2017; originally announced December 2017.

    Comments: 10 pages, 5 figures

    Journal ref: Phys. Rev. E 97, 032137 (2018)

  23. Shadow-free multimers as extreme-performance meta-atoms

    Authors: M. Safari, M. Albooyeh, C. R. Simovski, S. A. Tretyakov

    Abstract: We generalize the concept of parity-time symmetric structures with the goal to create meta-atoms exhibiting extraordinary abilities to overcome the presumed limitations in the scattering of overall lossless particles, such as non-zero forward scattering and the equality of scattering and extinction powers for all lossless particles. Although the forward scattering amplitude and the extinction cros… ▽ More

    Submitted 16 November, 2017; v1 submitted 24 October, 2017; originally announced October 2017.

    Comments: 14 pages, 9 Figures

    Journal ref: Phys. Rev. B 97, 085412 (2018)

  24. arXiv:1704.05537  [pdf, other

    cs.IT math.NA physics.optics

    Signaling on the Continuous Spectrum of Nonlinear Optical fiber

    Authors: Iman Tavakkolnia, Majid Safari

    Abstract: This paper studies different signaling techniques on the continuous spectrum (CS) of nonlinear optical fiber defined by nonlinear Fourier transform. Three different signaling techniques are proposed and analyzed based on the statistics of the noise added to CS after propagation along the nonlinear optical fiber. The proposed methods are compared in terms of error performance, distance reach, and c… ▽ More

    Submitted 21 September, 2017; v1 submitted 18 April, 2017; originally announced April 2017.

    Journal ref: Optics Express, vol. 25, issue 16, pages 18685-18702, July 2017

  25. Discrete Fourier Transform Method for Discrimination of Digital Scintillation Pulses in Mixed Neutron-Gamma Fields

    Authors: M. J. Safari, F. Abbasi Davani, H. Afarideh, S. Jamili, E. Bayat

    Abstract: A Discrete Fourier Transform Method (DFTM) for discrimination between the signal of neutrons and gamma rays in organic scintillation detectors is presented. The method is based on the transformation of signals into the frequency domain using the sine and cosine Fourier transforms in combination with the discrete Fourier transform. The method is largely benefited from considerable differences that… ▽ More

    Submitted 1 November, 2016; originally announced November 2016.

    Comments: 9 pages, 9 figures, 2 tables

    Journal ref: IEEE Trans. Nucl. Sci. Vol. 77, No. 1, pp. 325-332, 2016

  26. Differentiation method for localization of Compton edge in organic scintillation detectors

    Authors: M. J. Safari, F. Abbasi Davani, H. Afarideh

    Abstract: This paper, presents a simple method for accurate calibration of organic scintillation detectors. The method is based on the fact that differentiating the response function leads to accurate estimation of the Compton edge. The differentiation method in addition to the location of the Compton edge, gives insights into the parameters of the folded Gaussian function which is useful for determination… ▽ More

    Submitted 25 November, 2016; v1 submitted 28 October, 2016; originally announced October 2016.

    Comments: 13 pages, 8 figures

    Journal ref: Radiation Physics and Engineering 2020; 1(4), pp. 9-16