Skip to main content
archive
Search Submit Donate Log in
Press Enter to search · Advanced search

Condensed Matter > Materials Science

arXiv:2208.01692 (cond-mat)
[Submitted on 2 Aug 2022]

Title:A cloud platform for automating and sharing analysis of raw simulation data from high throughput polymer molecular dynamics simulations

Authors:Tian Xie, Ha-Kyung Kwon, Daniel Schweigert, Sheng Gong, Arthur France-Lanord, Arash Khajeh, Emily Crabb, Michael Puzon, Chris Fajardo, Will Powelson, Yang Shao-Horn, Jeffrey C. Grossman
View a PDF of the paper titled A cloud platform for automating and sharing analysis of raw simulation data from high throughput polymer molecular dynamics simulations, by Tian Xie and 11 other authors
View PDF HTML (experimental)
Abstract:Open material databases storing hundreds of thousands of material structures and their corresponding properties have become the cornerstone of modern computational materials science. Yet, the raw outputs of the simulations, such as the trajectories from molecular dynamics simulations and charge densities from density functional theory calculations, are generally not shared due to their huge size. In this work, we describe a cloud-based platform to facilitate the sharing of raw data and enable the fast post-processing in the cloud to extract new properties defined by the user. As an initial demonstration, our database currently includes 6286 molecular dynamics trajectories for amorphous polymer electrolytes and 5.7 terabytes of data. We create a public analysis library at this https URL to extract multiple properties from the raw data, using both expert designed functions and machine learning models. The analysis is run automatically with computation in the cloud, and results then populate a database that can be accessed publicly. Our platform encourages users to contribute both new trajectory data and analysis functions via public interfaces. Newly analyzed properties will be incorporated into the database. Finally, we create a front-end user interface at this https URL for browsing and visualization of our data. We envision the platform to be a new way of sharing raw data and new insights for the computational materials science community.
Comments: 21 pages, 7 figures
Subjects: Materials Science (cond-mat.mtrl-sci); Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Computational Physics (physics.comp-ph)
Cite as: arXiv:2208.01692 [cond-mat.mtrl-sci]
  (or arXiv:2208.01692v1 [cond-mat.mtrl-sci] for this version)
  https://doi.org/10.48550/arXiv.2208.01692
arXiv-issued DOI via DataCite

Submission history

From: Tian Xie [view email]
[v1] Tue, 2 Aug 2022 18:40:54 UTC (3,082 KB)
Full-text links:

Access Paper:

    View a PDF of the paper titled A cloud platform for automating and sharing analysis of raw simulation data from high throughput polymer molecular dynamics simulations, by Tian Xie and 11 other authors
  • View PDF
  • HTML (experimental)
  • TeX Source
view license

Current browse context:

cond-mat.mtrl-sci
< prev   |   next >
new | recent | 2022-08
Change to browse by:
cond-mat
cs
cs.AI
cs.LG
physics
physics.comp-ph

References & Citations

  • NASA ADS
  • Google Scholar
  • Semantic Scholar
Loading...

BibTeX formatted citation

Data provided by:

Bookmark

BibSonomy Reddit

Bibliographic and Citation Tools

Bibliographic Explorer (What is the Explorer?)
Connected Papers (What is Connected Papers?)
Litmaps (What is Litmaps?)
scite Smart Citations (What are Smart Citations?)

Code, Data and Media Associated with this Article

alphaXiv (What is alphaXiv?)
CatalyzeX Code Finder for Papers (What is CatalyzeX?)
DagsHub (What is DagsHub?)
Gotit.pub (What is GotitPub?)
Hugging Face (What is Huggingface?)
ScienceCast (What is ScienceCast?)

Demos

Replicate (What is Replicate?)
Hugging Face Spaces (What is Spaces?)
TXYZ.AI (What is TXYZ.AI?)

Recommenders and Search Tools

Influence Flower (What are Influence Flowers?)
CORE Recommender (What is CORE?)
IArxiv Recommender (What is IArxiv?)
  • Author
  • Venue
  • Institution
  • Topic

arXivLabs: experimental projects with community collaborators

arXivLabs is a framework that allows collaborators to develop and share new arXiv features directly on our website.

Both individuals and organizations that work with arXivLabs have embraced and accepted our values of openness, community, excellence, and user data privacy. arXiv is committed to these values and only works with partners that adhere to them.

Have an idea for a project that will add value for arXiv's community? Learn more about arXivLabs.

Which authors of this paper are endorsers? | Disable MathJax (What is MathJax?)
We gratefully acknowledge support from our major funders, member institutions, , and all contributors.
About · Help · Contact · Subscribe · Copyright · Privacy · Accessibility · Operational Status (opens in new tab)
Major funding support from
Simons Foundation Simons Foundation International Schmidt Sciences