For resequencing:

* 5'-end primer (TruSeq universal adapter):
  AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT

* 3'-end primer 1 (first half of TruSeq indexed adapter):
  AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC

* 3'-end primer 2 (second half of TrueSeq indexed adapter):
  ATCTCGTATGCCGTCTTCTGCTTG

References:

* http://tucf-genomics.tufts.edu/documents/protocols/TUCF_Understanding_Illumina_TruSeq_Adapters.pdf

* http://www.ark-genomics.org/events-online-training-eu-training-course/adapter-and-quality-trimming-illumina-data
