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Adrian M. Altenhoff
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Publications
- 2025
- [j17]Silvia Prieto-Baños
, Yannis Nevers, Adrian M. Altenhoff, Alex Warwick Vesztrocy
Annotation matters: the effect of structural gene annotation on orthology inference. Bioinform. 41(7) (2025) - 2022
- [j16]Alina Nicheperovich
OMAMO: orthology-based alternative model organism selection. Bioinform. 38(10): 2965-2966 (2022) - [j15]Yannis Nevers, Tamsin E. M. Jones
The Quest for Orthologs orthology benchmark service in 2022. Nucleic Acids Res. 50(W1): 623-632 (2022) - 2021
- [j14]Adrian M. Altenhoff, Clément-Marie Train, Kimberly J. Gilbert
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more. Nucleic Acids Res. 49(Database-Issue): D373-D379 (2021) - 2020
- [j13]Adrian M. Altenhoff
The Quest for Orthologs benchmark service and consensus calls in 2020. Nucleic Acids Res. 48(Webserver-Issue): W538-W545 (2020) - [c1]Stuart Byma, Akash Balasaheb Dhasade
Parallel and Scalable Precise Clustering. PACT 2020: 217-228 - 2019
- [j12]Ivana Pilizota
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome. Bioinform. 35(7): 1159-1166 (2019) - [j11]Clément-Marie Train, Miguel Pignatelli, Adrian M. Altenhoff, Christophe Dessimoz
iHam and pyHam: visualizing and processing hierarchical orthologous groups. Bioinform. 35(14): 2504-2506 (2019) - [i2]Stuart Byma, Akash Balasaheb Dhasade, Adrian M. Altenhoff, Christophe Dessimoz
Parallel and Scalable Precise Clustering for Homologous Protein Discovery. CoRR abs/1908.10574 (2019) - [i1]Klara Kaleb
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python. F1000Research 8: 42 (2019) - 2018
- [j10]Kristoffer Forslund
Gearing up to handle the mosaic nature of life in the quest for orthologs. Bioinform. 34(2): 323-329 (2018) - [j9]Adrian M. Altenhoff
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces. Nucleic Acids Res. 46(Database-Issue): D477-D485 (2018) - 2017
- [j8]Clément-Marie Train, Natasha M. Glover
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference. Bioinform. 33(14): i75-i82 (2017) - 2015
- [j7]Adrian M. Altenhoff
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. Nucleic Acids Res. 43(Database-Issue): 240-249 (2015) - 2012
- [j5]Adrian M. Altenhoff
Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs. PLoS Comput. Biol. 8(5) (2012) - [j4]Nives Skunca, Adrian M. Altenhoff
Quality of Computationally Inferred Gene Ontology Annotations. PLoS Comput. Biol. 8(5) (2012) - 2011
- [j3]Adrian M. Altenhoff
OMA 2011: orthology inference among 1000 complete genomes. Nucleic Acids Res. 39(Database-Issue): 289-294 (2011) - 2009
- [j2]Adrian M. Altenhoff
Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods. PLoS Comput. Biol. 5(1) (2009)
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