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BibTeX records: Cassie S. Mitchell
@article{DBLP:journals/bioinformatics/Abreu-VicenteSE26,
author = {Jorge Abreu{-}Vicente and
Hannah Sonntag and
Thomas Eidens and
Cassie S. Mitchell and
Thomas Lemberger},
title = {Integrating curation into scientific publishing to train {AI} models},
journal = {Bioinform.},
volume = {42},
number = {1},
year = {2026},
url = {https://doi.org/10.1093/bioinformatics/btaf685},
doi = {10.1093/BIOINFORMATICS/BTAF685},
timestamp = {Wed, 25 Feb 2026 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Abreu-VicenteSE26.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/NursalM26,
author = {Batuhan Nursal and
Cassie S. Mitchell},
editor = {Maria Liakata and
Viviane P. Moreira and
Jiajun Zhang and
David Jurgens},
title = {Understanding LLMs' summarization capabilities: an analysis of biomedical
abstract and lay summary generation},
booktitle = {Findings of the Association for Computational Linguistics, {ACL} 2026,
San Diego, California, United States, July 2-7, 2026},
pages = {11393--11417},
publisher = {Association for Computational Linguistics},
year = {2026},
url = {https://doi.org/10.18653/v1/2026.findings-acl.554},
doi = {10.18653/V1/2026.FINDINGS-ACL.554},
timestamp = {Thu, 30 Jul 2026 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/NursalM26.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eacl/YeM26,
author = {Christophe Ye and
Cassie S. Mitchell},
editor = {Vera Demberg and
Kentaro Inui and
Llu{\'{\i}}s Marquez},
title = {Where do LLMs currently stand on biomedical {NER} in both clean and
noisy settings ?},
booktitle = {Findings of the Association for Computational Linguistics: {EACL}
2026, Rabat, Morocco, March 24-29, 2026},
series = {Findings of {ACL}},
pages = {977--1001},
publisher = {Association for Computational Linguistics},
year = {2026},
url = {https://doi.org/10.18653/v1/2026.findings-eacl.51},
doi = {10.18653/V1/2026.FINDINGS-EACL.51},
timestamp = {Wed, 10 Jun 2026 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eacl/YeM26.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bdcc/XieLGM25,
author = {Jiajia Xie and
Chen Lin and
Xinyu Guo and
Cassie S. Mitchell},
title = {Source Robust Non-Parametric Reconstruction of Epidemic-like Event-Based
Network Diffusion Processes Under Online Data},
journal = {Big Data Cogn. Comput.},
volume = {9},
number = {10},
pages = {262},
year = {2025},
url = {https://doi.org/10.3390/bdcc9100262},
doi = {10.3390/BDCC9100262},
timestamp = {Sat, 22 Aug 2026 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bdcc/XieLGM25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/YeM25,
author = {Christophe Ye and
Cassie S. Mitchell},
editor = {Wanxiang Che and
Joyce Nabende and
Ekaterina Shutova and
Mohammad Taher Pilehvar},
title = {{LLM} as Entity Disambiguator for Biomedical Entity-Linking},
booktitle = {Proceedings of the 63rd Annual Meeting of the Association for Computational
Linguistics (Volume 2: Short Papers), {ACL} 2025, Vienna, Austria,
July 27 - August 1, 2025},
pages = {301--312},
publisher = {Association for Computational Linguistics},
year = {2025},
url = {https://doi.org/10.18653/v1/2025.acl-short.25},
doi = {10.18653/V1/2025.ACL-SHORT.25},
timestamp = {Thu, 25 Sep 2025 13:05:53 +0200},
biburl = {https://dblp.org/rec/conf/acl/YeM25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/naacl/BathalaYNLKM25,
author = {Prasanth Bathala and
Christophe Ye and
Batuhan Nursal and
Shubham Lohiya and
David Kartchner and
Cassie S. Mitchell},
editor = {Luis Chiruzzo and
Alan Ritter and
Lu Wang},
title = {BioEL: {A} Comprehensive Python Package for Biomedical Entity Linking},
booktitle = {Findings of the Association for Computational Linguistics: {NAACL}
2025, Albuquerque, New Mexico, USA, April 29 - May 4, 2025},
series = {Findings of {ACL}},
volume = {{NAACL} 2025},
pages = {1709--1721},
publisher = {Association for Computational Linguistics},
year = {2025},
url = {https://doi.org/10.18653/v1/2025.findings-naacl.93},
doi = {10.18653/V1/2025.FINDINGS-NAACL.93},
timestamp = {Tue, 27 Jan 2026 20:27:02 +0100},
biburl = {https://dblp.org/rec/conf/naacl/BathalaYNLKM25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/information/RajaramM24,
author = {Sara Rajaram and
Cassie S. Mitchell},
title = {Data Augmentation with Cross-Modal Variational Autoencoders {(DACMVA)}
for Cancer Survival Prediction},
journal = {Inf.},
volume = {15},
number = {1},
pages = {7},
year = {2024},
url = {https://doi.org/10.3390/info15010007},
doi = {10.3390/INFO15010007},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/information/RajaramM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/chil/TandonLM24,
author = {Raghav Tandon and
James J. Lah and
Cassie S. Mitchell},
editor = {Tom J. Pollard and
Edward Choi and
Pankhuri Singhal and
Michael Hughes and
Elena Sizikova and
Bobak Mortazavi and
Irene Chen and
Fei Wang and
Tasmie Sarker and
Matthew McDermott and
Marzyeh Ghassemi},
title = {s-SuStaIn: Scaling subtype and stage inference via simultaneous clustering
of subjects and biomarkers},
booktitle = {Conference on Health, Inference, and Learning, New York, NY, USA,
27-28 June 2024},
series = {Proceedings of Machine Learning Research},
volume = {248},
pages = {461--476},
publisher = {{PMLR}},
year = {2024},
url = {https://proceedings.mlr.press/v248/tandon24a.html},
timestamp = {Thu, 05 Mar 2026 14:53:30 +0100},
biburl = {https://dblp.org/rec/conf/chil/TandonLM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KartchnerRAKM23,
author = {David Kartchner and
Selvi Ramalingam and
Irfan Al{-}Hussaini and
Olivia Kronick and
Cassie S. Mitchell},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Zero-Shot Information Extraction for Clinical Meta-Analysis using
Large Language Models},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {396--405},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.37},
doi = {10.18653/V1/2023.BIONLP-1.37},
timestamp = {Sun, 19 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/KartchnerRAKM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/Al-HussainiWM23,
author = {Irfan Al{-}Hussaini and
Austin Wu and
Cassie S. Mitchell},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Pathology Dynamics at BioLaySumm: the trade-off between Readability,
Relevance, and Factuality in Lay Summarization},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {592--601},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.63},
doi = {10.18653/V1/2023.BIONLP-1.63},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/Al-HussainiWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/KartchnerDLKBDM23,
author = {David Kartchner and
Jennifer Deng and
Shubham Lohiya and
Tejasri Kopparthi and
Prasanth Bathala and
Daniel Domingo{-}Fern{\'{a}}ndez and
Cassie S. Mitchell},
editor = {Houda Bouamor and
Juan Pino and
Kalika Bali},
title = {A Comprehensive Evaluation of Biomedical Entity Linking Models},
booktitle = {Proceedings of the 2023 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2023, Singapore, December 6-10, 2023},
pages = {14462--14478},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.emnlp-main.893},
doi = {10.18653/V1/2023.EMNLP-MAIN.893},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/KartchnerDLKBDM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/AlHussainiM23,
author = {Irfan Al{-}Hussaini and
Cassie S. Mitchell},
title = {Towards Interpretable Seizure Detection Using Wearables},
booktitle = {{IEEE} International Conference on Acoustics, Speech and Signal Processing
{ICASSP} 2023, Rhodes Island, Greece, June 4-10, 2023},
pages = {1--2},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICASSP49357.2023.10097091},
doi = {10.1109/ICASSP49357.2023.10097091},
timestamp = {Sun, 19 Jan 2025 13:18:24 +0100},
biburl = {https://dblp.org/rec/conf/icassp/AlHussainiM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/TandonKM23,
author = {Raghav Tandon and
Anna Kirkpatrick and
Cassie S. Mitchell},
editor = {Alejandro F. Frangi and
Marleen de Bruijne and
Demian Wassermann and
Nassir Navab},
title = {sEBM: Scaling Event Based Models to Predict Disease Progression via
Implicit Biomarker Selection and Clustering},
booktitle = {Information Processing in Medical Imaging - 28th International Conference,
{IPMI} 2023, San Carlos de Bariloche, Argentina, June 18-23, 2023,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13939},
pages = {208--221},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-34048-2\_17},
doi = {10.1007/978-3-031-34048-2\_17},
timestamp = {Sat, 21 Oct 2023 10:46:26 +0200},
biburl = {https://dblp.org/rec/conf/ipmi/TandonKM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigir/KartchnerATDLBM23,
author = {David Kartchner and
Irfan Al{-}Hussaini and
Haydn Turner and
Jennifer Deng and
Shubham Lohiya and
Prasanth Bathala and
Cassie S. Mitchell},
editor = {Hsin{-}Hsi Chen and
Wei{-}Jou (Edward) Duh and
Hen{-}Hsen Huang and
Makoto P. Kato and
Josiane Mothe and
Barbara Poblete},
title = {BioSift: {A} Dataset for Filtering Biomedical Abstracts for Drug Repurposing
and Clinical Meta-Analysis},
booktitle = {Proceedings of the 46th International {ACM} {SIGIR} Conference on
Research and Development in Information Retrieval, {SIGIR} 2023, Taipei,
Taiwan, July 23-27, 2023},
pages = {2913--2923},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3539618.3591897},
doi = {10.1145/3539618.3591897},
timestamp = {Wed, 25 Feb 2026 08:28:08 +0100},
biburl = {https://dblp.org/rec/conf/sigir/KartchnerATDLBM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bdcc/KirkpatrickOKAA22,
author = {Anna Kirkpatrick and
Chidozie Onyeze and
David Kartchner and
Stephen Allegri and
Davi Nakajima An and
Kevin McCoy and
Evie Davalbhakta and
Cassie S. Mitchell},
title = {Optimizations for Computing Relatedness in Biomedical Heterogeneous
Information Networks: SemNet 2.0},
journal = {Big Data Cogn. Comput.},
volume = {6},
number = {1},
pages = {27},
year = {2022},
url = {https://doi.org/10.3390/bdcc6010027},
doi = {10.3390/BDCC6010027},
timestamp = {Tue, 29 Jul 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bdcc/KirkpatrickOKAA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bdcc/AllegriMM22,
author = {Stephen Allegri and
Kevin McCoy and
Cassie S. Mitchell},
title = {CompositeView: {A} Network-Based Visualization Tool},
journal = {Big Data Cogn. Comput.},
volume = {6},
number = {2},
pages = {66},
year = {2022},
url = {https://doi.org/10.3390/bdcc6020066},
doi = {10.3390/BDCC6020066},
timestamp = {Tue, 29 Jul 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bdcc/AllegriMM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigdataconf/AlHussainiALBM22,
author = {Irfan Al{-}Hussaini and
Davi Nakajima An and
Albert J. Lee and
Sarah Bi and
Cassie S. Mitchell},
editor = {Shusaku Tsumoto and
Yukio Ohsawa and
Lei Chen and
Dirk Van den Poel and
Xiaohua Hu and
Yoichi Motomura and
Takuya Takagi and
Lingfei Wu and
Ying Xie and
Akihiro Abe and
Vijay Raghavan},
title = {{CCS} Explorer: Relevance Prediction, Extractive Summarization, and
Named Entity Recognition from Clinical Cohort Studies},
booktitle = {{IEEE} International Conference on Big Data, Big Data 2022, Osaka,
Japan, December 17-20, 2022},
pages = {5173--5181},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/BigData55660.2022.10020807},
doi = {10.1109/BIGDATA55660.2022.10020807},
timestamp = {Thu, 20 Mar 2025 21:08:37 +0100},
biburl = {https://dblp.org/rec/conf/bigdataconf/AlHussainiALBM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/Al-HussainiM22,
author = {Irfan Al{-}Hussaini and
Cassie S. Mitchell},
editor = {Mohammad Al Hasan and
Li Xiong},
title = {{SERF:} Interpretable Sleep Staging using Embeddings, Rules, and Features},
booktitle = {Proceedings of the 31st {ACM} International Conference on Information
{\&} Knowledge Management, Atlanta, GA, USA, October 17-21, 2022},
pages = {3791--3795},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3511808.3557700},
doi = {10.1145/3511808.3557700},
timestamp = {Sun, 02 Nov 2025 21:27:39 +0100},
biburl = {https://dblp.org/rec/conf/cikm/Al-HussainiM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-11174,
author = {Irfan Al{-}Hussaini and
Cassie S. Mitchell},
title = {{SERF:} Interpretable Sleep Staging using Embeddings, Rules, and Features},
journal = {CoRR},
volume = {abs/2209.11174},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2209.11174},
doi = {10.48550/ARXIV.2209.11174},
eprinttype = {arXiv},
eprint = {2209.11174},
timestamp = {Thu, 29 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2209-11174.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-00201,
author = {Irfan Al{-}Hussaini and
Davi Nakajima An and
Albert J. Lee and
Sarah Bi and
Cassie S. Mitchell},
title = {{CCS} Explorer: Relevance Prediction, Extractive Summarization, and
Named Entity Recognition from Clinical Cohort Studies},
journal = {CoRR},
volume = {abs/2211.00201},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.00201},
doi = {10.48550/ARXIV.2211.00201},
eprinttype = {arXiv},
eprint = {2211.00201},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-00201.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-03282,
author = {Irfan Al{-}Hussaini and
Cassie S. Mitchell},
title = {Performance and utility trade-off in interpretable sleep staging},
journal = {CoRR},
volume = {abs/2211.03282},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.03282},
doi = {10.48550/ARXIV.2211.03282},
eprinttype = {arXiv},
eprint = {2211.03282},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-03282.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/RenLSKMZ20,
author = {Wendi Ren and
Yinghao Li and
Hanting Su and
David Kartchner and
Cassie S. Mitchell and
Chao Zhang},
editor = {Trevor Cohn and
Yulan He and
Yang Liu},
title = {Denoising Multi-Source Weak Supervision for Neural Text Classification},
booktitle = {Findings of the Association for Computational Linguistics: {EMNLP}
2020, Online Event, 16-20 November 2020},
series = {Findings of {ACL}},
volume = {{EMNLP} 2020},
pages = {3739--3754},
publisher = {Association for Computational Linguistics},
year = {2020},
url = {https://doi.org/10.18653/v1/2020.findings-emnlp.334},
doi = {10.18653/V1/2020.FINDINGS-EMNLP.334},
timestamp = {Wed, 10 Jun 2026 11:16:55 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/RenLSKMZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-04582,
author = {Wendi Ren and
Yinghao Li and
Hanting Su and
David Kartchner and
Cassie S. Mitchell and
Chao Zhang},
title = {Denoising Multi-Source Weak Supervision for Neural Text Classification},
journal = {CoRR},
volume = {abs/2010.04582},
year = {2020},
url = {https://arxiv.org/abs/2010.04582},
eprinttype = {arXiv},
eprint = {2010.04582},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-04582.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/PfohlKCM18,
author = {Stephen R. Pfohl and
Renaid B. Kim and
Grant S. Coan and
Cassie S. Mitchell},
title = {Unraveling the Complexity of Amyotrophic Lateral Sclerosis Survival
Prediction},
journal = {Frontiers Neuroinformatics},
volume = {12},
pages = {36},
year = {2018},
url = {https://doi.org/10.3389/fninf.2018.00036},
doi = {10.3389/FNINF.2018.00036},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fini/PfohlKCM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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