{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,21]],"date-time":"2026-04-21T02:36:24Z","timestamp":1776738984018,"version":"3.51.2"},"reference-count":74,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2020,2,1]],"date-time":"2020-02-01T00:00:00Z","timestamp":1580515200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2020,2,1]],"date-time":"2020-02-01T00:00:00Z","timestamp":1580515200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2020,12,27]],"date-time":"2020-12-27T00:00:00Z","timestamp":1609027200000},"content-version":"am","delay-in-days":330,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"funder":[{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Environmental Modelling & Software"],"published-print":{"date-parts":[[2020,2]]},"DOI":"10.1016\/j.envsoft.2019.104609","type":"journal-article","created":{"date-parts":[[2019,12,20]],"date-time":"2019-12-20T17:17:51Z","timestamp":1576862271000},"page":"104609","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":41,"special_numbering":"C","title":["DynACof: A process-based model to study growth, yield and ecosystem services of coffee agroforestry systems"],"prefix":"10.1016","volume":"124","author":[{"given":"R\u00e9mi","family":"Vezy","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Guerric","family":"le Maire","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mathias","family":"Christina","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Selena","family":"Georgiou","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pablo","family":"Imbach","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hugo G.","family":"Hidalgo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eric J.","family":"Alfaro","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"C\u00e9line","family":"Blitz-Frayret","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fabien","family":"Charbonnier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter","family":"Lehner","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Denis","family":"Loustau","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Olivier","family":"Roupsard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"issue":"9","key":"10.1016\/j.envsoft.2019.104609_bib1","first-page":"D05109","article-title":"Crop evapotranspiration-Guidelines for computing crop water requirements-FAO Irrigation and drainage","volume":"300","author":"Allen","year":"1998"},{"issue":"12","key":"10.1016\/j.envsoft.2019.104609_bib2","doi-asserted-by":"crossref","first-page":"1532","DOI":"10.1094\/PHYTO-97-12-1532","article-title":"Topography and crop management are key factors for the development of American leaf spot epidemics on coffee in Costa Rica","volume":"97","author":"Avelino","year":"2007","journal-title":"Phytopathology"},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib3","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1137\/141000671","article-title":"Julia: a fresh approach to numerical computing","volume":"59","author":"Bezanson","year":"2017","journal-title":"SIAM Rev."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib4","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1590\/S0006-87052001000100008","article-title":"Definition and outline for the phenological phases of Arabic coffee under brazilian tropical conditions","volume":"60","author":"Camargo","year":"2001","journal-title":"Bragantia"},{"key":"10.1016\/j.envsoft.2019.104609_bib5","series-title":"Mesures des sucres lents et rapides d'organes de caf\u00e9ier par double approche VISNIR et Biochimique","first-page":"30","author":"Cambou","year":"2012"},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib6","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1023\/B:AGFO.0000049435.22512.2d","article-title":"Growth and yield of coffee plants in agroforestry and monoculture systems in Minas Gerais, Brazil","volume":"63","author":"Campanha","year":"2004","journal-title":"Agrofor. Syst."},{"issue":"6","key":"10.1016\/j.envsoft.2019.104609_bib7","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1097\/00010694-197406000-00001","article-title":"A simple method for determining unsaturated conductivity from moisture retention data","volume":"117","author":"Campbell","year":"1974","journal-title":"Soil Sci."},{"key":"10.1016\/j.envsoft.2019.104609_bib8","series-title":"Coffee: Botany, Biochemistry and Production of Beans and Beverage","first-page":"108","article-title":"Physiology of the coffee crop","author":"Cannell","year":"1985"},{"key":"10.1016\/j.envsoft.2019.104609_bib9","series-title":"Measuring and Modeling Light, Water and Carbon Balance and Net Primary Productivity in a Coffee-Based Agroforestry System of Costa Rica","author":"Charbonnier","year":"2013"},{"key":"10.1016\/j.envsoft.2019.104609_bib10","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1016\/j.agrformet.2013.07.010","article-title":"Competition for light in heterogeneous canopies: application of MAESTRA to a coffee (Coffea arabica L.) agroforestry system","volume":"181","author":"Charbonnier","year":"2013","journal-title":"Agric. For. Meteorol."},{"issue":"8","key":"10.1016\/j.envsoft.2019.104609_bib11","doi-asserted-by":"crossref","first-page":"1592","DOI":"10.1111\/pce.12964","article-title":"Increased light-use efficiency sustains net primary productivity of shaded coffee plants in agroforestry system","volume":"40","author":"Charbonnier","year":"2017","journal-title":"Plant Cell Environ."},{"issue":"3","key":"10.1016\/j.envsoft.2019.104609_bib12","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1139\/cjfr-2015-0173","article-title":"Sensitivity and uncertainty analysis of the carbon and water fluxes at the tree scale in Eucalyptus plantations using a metamodeling approach","volume":"46","author":"Christina","year":"2016","journal-title":"Can. J. For. Res."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib13","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1007\/s10584-018-2346-4","article-title":"Why could the coffee crop endure climate change and global warming to a greater extent than previously estimated?","volume":"152","author":"DaMatta","year":"2019","journal-title":"Clim. Change"},{"issue":"2","key":"10.1016\/j.envsoft.2019.104609_bib14","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1016\/S0168-1923(01)00236-2","article-title":"Simulation of leaf transpiration and sap flow in virtual plants: model description and application to a coffee plantation in Costa Rica","volume":"109","author":"Dauzat","year":"2001","journal-title":"Agric. For. Meteorol."},{"issue":"4","key":"10.1016\/j.envsoft.2019.104609_bib15","doi-asserted-by":"crossref","first-page":"833","DOI":"10.1093\/aob\/mcw153","article-title":"Root biomass, turnover and net primary productivity of a coffee agroforestry system in Costa Rica: effects of soil depth, shade trees, distance to row and coffee age","volume":"118","author":"Defrenet","year":"2016","journal-title":"Ann. Bot."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib16","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1080\/14620316.1995.11515269","article-title":"Temperature affects vegetative growth and flowering of coffee (Coffea arabica L.)","volume":"70","author":"Drinnan","year":"1995","journal-title":"J. Hortic. Sci."},{"issue":"2\u20134","key":"10.1016\/j.envsoft.2019.104609_bib17","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1016\/j.ecolmodel.2005.01.004","article-title":"Modelling carbon and water cycles in a beech forest: Part I: model description and uncertainty analysis on modelled NEE","volume":"185","author":"Dufr\u00eane","year":"2005","journal-title":"Ecol. Model."},{"issue":"4","key":"10.1016\/j.envsoft.2019.104609_bib18","doi-asserted-by":"crossref","first-page":"919","DOI":"10.5194\/gmd-5-919-2012","article-title":"MAESPA: a model to study interactions between water limitation, environmental drivers and vegetation function at tree and stand levels, with an example application to [CO2] \u00d7 drought interactions","volume":"5","author":"Duursma","year":"2012","journal-title":"Geosci. Model Dev. (GMD)"},{"key":"10.1016\/j.envsoft.2019.104609_bib19","first-page":"159","article-title":"Exploration par construction de m\u00e9tamod\u00e8les. Analyse de sensibilit\u00e9 et exploration de mod\u00e8les","author":"Faivre","year":"2013","journal-title":"Applications aux mod\u00e8les environnementaux"},{"issue":"2","key":"10.1016\/j.envsoft.2019.104609_bib20","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1137\/0717021","article-title":"Monotone piecewise cubic interpolation","volume":"17","author":"Fritsch","year":"1980","journal-title":"SIAM J. Numer. Anal."},{"key":"10.1016\/j.envsoft.2019.104609_bib21","first-page":"1","article-title":"Coffee growth, pest and yield responses to free-air CO2 enrichment","author":"Ghini","year":"2015","journal-title":"Clim. Change"},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib22","doi-asserted-by":"crossref","first-page":"369","DOI":"10.5194\/hess-15-369-2011","article-title":"Modelling the hydrological behaviour of a coffee agroforestry basin in Costa Rica","volume":"15","author":"G\u00f3mez-Delgado","year":"2011","journal-title":"Hydrol. Earth Syst. Sci."},{"issue":"2\u20133","key":"10.1016\/j.envsoft.2019.104609_bib23","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1016\/S0304-3800(98)00205-1","article-title":"A lumped water balance model to evaluate duration and intensity of drought constraints in forest stands","volume":"116","author":"Granier","year":"1999","journal-title":"Ecol. Model."},{"key":"10.1016\/j.envsoft.2019.104609_bib24","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1590\/S0301-80591998000300005","article-title":"Tritrophic analysis of the coffee (Coffea arabica) - coffee berry borer [Hypothenemus hampei (Ferrari)] - parasitoid system","volume":"27","author":"Gutierrez","year":"1998","journal-title":"An. Da Soc. Entomol. do Bras."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib25","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1007\/s10584-016-1786-y","article-title":"Observed (1970\u20131999) climate variability in Central America using a high-resolution meteorological dataset with implication to climate change studies","volume":"141","author":"Hidalgo","year":"2017","journal-title":"Clim. Change"},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib26","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s10457-009-9229-7","article-title":"Agroforestry for ecosystem services and environmental benefits: an overview","volume":"76","author":"Jose","year":"2009","journal-title":"Agrofor. Syst."},{"issue":"2","key":"10.1016\/j.envsoft.2019.104609_bib27","doi-asserted-by":"crossref","DOI":"10.1007\/s10457-012-9573-x","article-title":"Agroforestry for biomass production and carbon sequestration: an overview","volume":"86","author":"Jose","year":"2012","journal-title":"Agrofor. Syst."},{"key":"10.1016\/j.envsoft.2019.104609_bib28","series-title":"Caret: Classification and Regression Training","author":"Kuhn","year":"2019"},{"issue":"5","key":"10.1016\/j.envsoft.2019.104609_bib29","doi-asserted-by":"crossref","first-page":"521","DOI":"10.1051\/forest:2000139","article-title":"Carbon allocation among tree organs: a review of basic processes and representation in functional-structural tree models","volume":"57","author":"Lacointe","year":"2000","journal-title":"Ann. For. Sci."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib30","first-page":"43","article-title":"Applying 3-PG, a simple process-based model designed to produce practical results, to data from loblolly pine experiments","volume":"47","author":"Landsberg","year":"2001","journal-title":"For. Sci."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib31","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1111\/j.1365-2486.2009.02041.x","article-title":"Separation of net ecosystem exchange into assimilation and respiration using a light response curve approach: critical issues and global evaluation","volume":"16","author":"Lasslop","year":"2010","journal-title":"Glob. Chang. Biol."},{"issue":"1\u20132","key":"10.1016\/j.envsoft.2019.104609_bib32","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1016\/j.agrformet.2006.12.009","article-title":"Agroforestry management as an adaptive strategy against potential microclimate extremes in coffee agriculture","volume":"144","author":"Lin","year":"2007","journal-title":"Agric. For. Meteorol."},{"issue":"4","key":"10.1016\/j.envsoft.2019.104609_bib33","doi-asserted-by":"crossref","first-page":"510","DOI":"10.1016\/j.agrformet.2009.11.010","article-title":"The role of agroforestry in reducing water loss through soil evaporation and crop transpiration in coffee agroecosystems","volume":"150","author":"Lin","year":"2010","journal-title":"Agric. For. Meteorol."},{"issue":"10","key":"10.1016\/j.envsoft.2019.104609_bib34","doi-asserted-by":"crossref","first-page":"2089","DOI":"10.1111\/j.1365-2486.2007.01420.x","article-title":"Carbon allocation in forest ecosystems","volume":"13","author":"Litton","year":"2007","journal-title":"Glob. Chang. Biol."},{"key":"10.1016\/j.envsoft.2019.104609_bib35","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.cosust.2013.07.013","article-title":"Agroforestry systems in a changing climate \u2014 challenges in projecting future performance","volume":"6","author":"Luedeling","year":"2014","journal-title":"Curr. Opin.Environ. Sustain."},{"key":"10.1016\/j.envsoft.2019.104609_bib36","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/j.agsy.2015.11.005","article-title":"Field-scale modeling of tree\u2013crop interactions: challenges and development needs","volume":"142","author":"Luedeling","year":"2016","journal-title":"Agric. Syst."},{"issue":"2","key":"10.1016\/j.envsoft.2019.104609_bib37","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1007\/s13593-013-0179-0","article-title":"Global agronomy, a new field of research. A review","volume":"34","author":"Makowski","year":"2014","journal-title":"Agron. Sustain. Dev."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib38","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1051\/agro:2007057","article-title":"Mixing plant species in cropping systems: concepts, tools and models","volume":"29","author":"Mal\u00e9zieux","year":"2009","journal-title":"A review. Agron. Sustain.Dev."},{"issue":"9","key":"10.1016\/j.envsoft.2019.104609_bib39","doi-asserted-by":"crossref","first-page":"934","DOI":"10.1111\/2041-210X.12250","article-title":"Extending the use of ecological models without sacrificing details: a generic and parsimonious meta-modelling approach","volume":"5","author":"Marie","year":"2014","journal-title":"Methods.Ecol. Evol."},{"key":"10.1016\/j.envsoft.2019.104609_bib40","series-title":"A Maestro Retrospective. Forests at the Land-Atmosphere Interface","first-page":"105","author":"Medlyn","year":"2004"},{"key":"10.1016\/j.envsoft.2019.104609_bib41","series-title":"Design of Cropping Systems Combining Production and Ecosystem Services: Developing a Methodology Combining Numerical Modeling and Participation of Farmers: Application to Coffee-Based Agroforestry in Costa Rica","author":"Meylan","year":"2012"},{"key":"10.1016\/j.envsoft.2019.104609_bib42","series-title":"Crop Growth Modeling and its Applications in Agricultural Meteorology. Satellite Remote Sensing and GIS Applications in Agricultural Meteorology","first-page":"235","author":"Murthy","year":"2004"},{"issue":"2","key":"10.1016\/j.envsoft.2019.104609_bib43","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1023\/A:1010603320653","article-title":"Shade improves coffee quality in a sub-optimal coffee-zone of Costa Rica","volume":"51","author":"Muschler","year":"2001","journal-title":"Agrofor. Syst."},{"issue":"3","key":"10.1016\/j.envsoft.2019.104609_bib44","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1016\/j.agee.2004.04.001","article-title":"Carbon sequestration in tropical and temperate agroforestry systems: a review with examples from Costa Rica and southern Canada","volume":"104","author":"Oelbermann","year":"2004","journal-title":"Agric. Ecosyst. Environ."},{"issue":"5","key":"10.1016\/j.envsoft.2019.104609_bib45","doi-asserted-by":"crossref","first-page":"843","DOI":"10.1007\/s00484-011-0486-6","article-title":"Agrometeorological parameters for prediction of the maturation period of Arabica coffee cultivars","volume":"56","author":"Pezzopane","year":"2012","journal-title":"Int. J. Biometeorol."},{"key":"10.1016\/j.envsoft.2019.104609_bib46","series-title":"Construction Costs and Payback Time of Biomass: a Whole Plant Perspective. A Whole Plant Perspective on Carbon-Nitrogen Interactions","first-page":"111","author":"Poorter","year":"1994"},{"key":"10.1016\/j.envsoft.2019.104609_bib47","series-title":"R: a Language and Environment for Statistical Computing","author":"R Core Team","year":"2019"},{"key":"10.1016\/j.envsoft.2019.104609_bib48","doi-asserted-by":"crossref","first-page":"76","DOI":"10.1016\/j.ecolmodel.2018.01.009","article-title":"Exploring adaptation strategies of coffee production to climate change using a process-based model","volume":"371","author":"Rahn","year":"2018","journal-title":"Ecol. Model."},{"issue":"7","key":"10.1016\/j.envsoft.2019.104609_bib49","doi-asserted-by":"crossref","DOI":"10.1029\/2011WR011527","article-title":"Review of surrogate modeling in water resources","volume":"48","author":"Razavi","year":"2012","journal-title":"Water Resour. Res."},{"issue":"19","key":"10.1016\/j.envsoft.2019.104609_bib50","doi-asserted-by":"crossref","first-page":"3626","DOI":"10.1016\/j.ecolmodel.2011.08.003","article-title":"A coffee agroecosystem model: I. Growth and development of the coffee plant","volume":"222","author":"Rodr\u00edguez","year":"2011","journal-title":"Ecol. Model."},{"issue":"6","key":"10.1016\/j.envsoft.2019.104609_bib51","doi-asserted-by":"crossref","first-page":"835","DOI":"10.1007\/s13595-015-0456-y","article-title":"Database of 478 allometric equations to estimate biomass for Mexican trees and forests","volume":"72","author":"Rojas-Garc\u00eda","year":"2015","journal-title":"Ann. For. Sci."},{"key":"10.1016\/j.envsoft.2019.104609_bib52","series-title":"Growth and Photosynthetic Down-Regulation in Coffea Arabica in Response to Restricted Root Volume","first-page":"1013","volume":"vol. 33","author":"Ronchi","year":"2006"},{"issue":"2","key":"10.1016\/j.envsoft.2019.104609_bib53","doi-asserted-by":"crossref","first-page":"157","DOI":"10.2307\/1941808","article-title":"Effects of climate change on plant respiration","volume":"1","author":"Ryan","year":"1991","journal-title":"Ecol. Appl."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib54","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1016\/0168-1923(93)90094-X","article-title":"Influence of canopy architecture on light penetration in lodgepole pine (Pinus contorta var. latifolia) forests","volume":"64","author":"Sampson","year":"1993","journal-title":"Agric. For. Meteorol."},{"issue":"6","key":"10.1016\/j.envsoft.2019.104609_bib55","doi-asserted-by":"crossref","first-page":"1535","DOI":"10.1007\/s10457-017-0100-y","article-title":"Shade trees: a determinant to the relative success of organic versus conventional coffee production","volume":"92","author":"Schnabel","year":"2018","journal-title":"Agrofor. Syst."},{"issue":"3","key":"10.1016\/j.envsoft.2019.104609_bib56","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1007\/s10457-009-9241-y","article-title":"Effects of Inga densiflora on the microclimate of coffee (Coffea arabica L.) and overall biomass under optimal growing conditions in Costa Rica","volume":"78","author":"Siles","year":"2010","journal-title":"Agrofor. Syst."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib57","doi-asserted-by":"crossref","first-page":"94","DOI":"10.1111\/j.1469-8137.2007.02088.x","article-title":"Simple equations to estimate light interception by isolated trees from canopy structure features: assessment with three-dimensional digitized apple trees","volume":"175","author":"Sinoquet","year":"2007","journal-title":"New Phytol."},{"key":"10.1016\/j.envsoft.2019.104609_bib58","article-title":"Espresso coffee: the chemistry of quality","author":"S\u00f6ndahl","year":"2005"},{"issue":"Suppl. C","key":"10.1016\/j.envsoft.2019.104609_bib59","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.eja.2012.04.004","article-title":"Avenues to meet food security. The role of agronomy on solving complexity in food production and resource use","volume":"43","author":"Spiertz","year":"2012","journal-title":"Eur. J. Agron."},{"key":"10.1016\/j.envsoft.2019.104609_bib60","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1016\/j.agee.2014.03.042","article-title":"Leaf area index as an indicator of ecosystem services and management practices: an application for coffee agroforestry","volume":"192","author":"Taugourdeau","year":"2014","journal-title":"Agric. Ecosyst. Environ."},{"issue":"5","key":"10.1016\/j.envsoft.2019.104609_bib61","doi-asserted-by":"crossref","first-page":"949","DOI":"10.1029\/WR025i005p00949","article-title":"Water and surface energy balance model with a multilayer canopy representation for remote sensing purposes","volume":"25","author":"Van de Griend","year":"1989","journal-title":"Water Resour. Res."},{"issue":"2","key":"10.1016\/j.envsoft.2019.104609_bib62","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1007\/s10681-015-1398-z","article-title":"Next generation variety development for sustainable production of arabica coffee (Coffea arabica L.): a review","volume":"204","author":"van der Vossen","year":"2015","journal-title":"Euphytica"},{"issue":"3","key":"10.1016\/j.envsoft.2019.104609_bib63","doi-asserted-by":"crossref","first-page":"341","DOI":"10.1007\/s10457-010-9294-y","article-title":"Coffee agroforestry systems in Central America: I. A review of quantitative information on physiological and ecological processes","volume":"80","author":"van Oijen","year":"2010","journal-title":"Agrofor. Syst."},{"issue":"3","key":"10.1016\/j.envsoft.2019.104609_bib64","doi-asserted-by":"crossref","first-page":"361","DOI":"10.1007\/s10457-010-9291-1","article-title":"Coffee agroforestry systems in Central America: II. Development of a simple process-based model and preliminary results","volume":"80","author":"Van Oijen","year":"2010","journal-title":"Agrofor. Syst."},{"issue":"7","key":"10.1016\/j.envsoft.2019.104609_bib65","doi-asserted-by":"crossref","first-page":"915","DOI":"10.1093\/treephys\/25.7.915","article-title":"Bayesian calibration of process-based forest models: bridging the gap between models and data","volume":"25","author":"Van Oijen","year":"2005","journal-title":"Tree Physiol."},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib66","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1007\/BF02371146","article-title":"Root turnover in a beech and a spruce stand of the Belgian Ardennes","volume":"105","author":"van Praag","year":"1988","journal-title":"Plant Soil"},{"key":"10.1016\/j.envsoft.2019.104609_bib67","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1016\/j.agrformet.2018.02.005","article-title":"Measuring and modelling energy partitioning in canopies of varying complexity using MAESPA model","volume":"253\u2013254","author":"Vezy","year":"2018","journal-title":"Agric. For. Meteorol."},{"key":"10.1016\/j.envsoft.2019.104609_bib68","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/j.envsoft.2011.05.003","article-title":"A comparison of eight metamodeling techniques for the simulation of N2O fluxes and N leaching from corn crops","volume":"34","author":"Villa-Vialaneix","year":"2012","journal-title":"Environ. Model. Softw"},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib69","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1046\/j.1469-8137.2001.00147.x","article-title":"Comparison of leaf construction costs in woody species with differing leaf life-spans in contrasting ecosystems","volume":"151","author":"Villar","year":"2001","journal-title":"New Phytol."},{"issue":"3\u20134","key":"10.1016\/j.envsoft.2019.104609_bib70","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1016\/0168-1923(90)90112-J","article-title":"Description and validation of an array model \u2014 maestro","volume":"51","author":"Wang","year":"1990","journal-title":"Agric. For. Meteorol."},{"key":"10.1016\/j.envsoft.2019.104609_bib71","series-title":"Coffee: Growing, Processing, Sustainable Production. A Guidebook for Growers, Processors, Traders, and Researchers","author":"Wintgens","year":"2004"},{"key":"10.1016\/j.envsoft.2019.104609_bib72","doi-asserted-by":"crossref","first-page":"278","DOI":"10.1016\/j.foodres.2017.11.016","article-title":"Effect of altitude on biochemical composition and quality of green arabica coffee beans can be affected by shade and postharvest processing method","volume":"105","author":"Worku","year":"2018","journal-title":"Food Res. Int."},{"issue":"16","key":"10.1016\/j.envsoft.2019.104609_bib73","doi-asserted-by":"crossref","first-page":"5015","DOI":"10.5194\/bg-15-5015-2018","article-title":"Basic and extensible post-processing of eddy covariance flux data with REddyProc","volume":"15","author":"Wutzler","year":"2018","journal-title":"Biogeosciences"},{"issue":"1","key":"10.1016\/j.envsoft.2019.104609_bib74","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1590\/S0006-87052008000100030","article-title":"Agrometeorological model for estimating the beginning of the flowering period for coffee crop (Coffea arabica L.)","volume":"67","author":"Zacharias","year":"2008","journal-title":"Bragantia"}],"container-title":["Environmental Modelling & Software"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1364815219305870?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1364815219305870?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,23]],"date-time":"2025-10-23T22:58:14Z","timestamp":1761260294000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1364815219305870"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,2]]},"references-count":74,"alternative-id":["S1364815219305870"],"URL":"https:\/\/doi.org\/10.1016\/j.envsoft.2019.104609","relation":{},"ISSN":["1364-8152"],"issn-type":[{"value":"1364-8152","type":"print"}],"subject":[],"published":{"date-parts":[[2020,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"DynACof: A process-based model to study growth, yield and ecosystem services of coffee agroforestry systems","name":"articletitle","label":"Article Title"},{"value":"Environmental Modelling & Software","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.envsoft.2019.104609","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2020 Elsevier Ltd. All rights reserved.","name":"copyright","label":"Copyright"}],"article-number":"104609"}}