User profiles for Yang Zhang

Yang Zhang - Verified email at nus.edu.sg - Cited by 66162
Yang Zhang - Verified email at joslin.harvard.edu - Cited by 12402

The I-TASSER Suite: protein structure and function prediction

J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang - Nature methods, 2015 - nature.com
To the Editor: Assignment of structure and function to all genes and gene products (such as
proteins) of all organisms represents a major challenge in this postgenomic era. Here we …

Circular intronic long noncoding RNAs

Y Zhang, XO Zhang, T Chen, JF Xiang, QF Yin… - Molecular cell, 2013 - cell.com
We describe the identification and characterization of circular intronic long noncoding RNAs
in human cells, which accumulate owing to a failure in debranching. The formation of such …

I-TASSER server for protein 3D structure prediction

Y Zhang - BMC bioinformatics, 2008 - Springer
Background Prediction of 3-dimensional protein structures from amino acid sequences
represents one of the most important problems in computational structural biology. The …

Deepseek-r1: Incentivizing reasoning capability in llms via reinforcement learning

…, L Zhang, L Xu, L Xia, M Zhang, M Zhang… - arXiv preprint arXiv …, 2025 - arxiv.org
General reasoning represents a long-standing and formidable challenge in artificial
intelligence. Recent breakthroughs, exemplified by large language models (LLMs) and chain-of-…

I-TASSER server: new development for protein structure and function predictions

J Yang, Y Zhang - Nucleic acids research, 2015 - academic.oup.com
The I-TASSER server ( http://zhanglab.ccmb.med.umich.edu/I-TASSER ) is an online resource
for automated protein structure prediction and structure-based function annotation. In I-…

I-TASSER: a unified platform for automated protein structure and function prediction

A Roy, A Kucukural, Y Zhang - Nature protocols, 2010 - nature.com
The iterative threading assembly refinement (I-TASSER) server is an integrated platform for
automated protein structure and function prediction based on the sequence-to-structure-to-…

Protein structure and function prediction using I‐TASSER

J Yang, Y Zhang - Current protocols in bioinformatics, 2015 - Wiley Online Library
I‐TASSER is a hierarchical protocol for automated protein structure prediction and structure‐based
function annotation. Starting from the amino acid sequence of target proteins, I‐…

Analyze the psychological impact of COVID-19 among the elderly population in China and make corresponding suggestions

…, Y Xu, J Dai, Y Zhang, B Liu, H Yang - Psychiatry …, 2020 - pmc.ncbi.nlm.nih.gov
… Haibo Yang conceived the idea for the Article. Hui Meng, Jiali Dai, Yang Zhang, Yang Xu
and Baogeng Liu … Yang Xu amended the manuscript and gave suggestions for data analysis. …

Deepseek-v3 technical report

…, L Zhang, M Li, M Wang, M Zhang, M Zhang… - arXiv preprint arXiv …, 2024 - arxiv.org
We present DeepSeek-V3, a strong Mixture-of-Experts (MoE) language model with 671B
total parameters with 37B activated for each token. To achieve efficient inference and cost-…

DeepSeek-R1 incentivizes reasoning in LLMs through reinforcement learning

…, L Wang, L Zhang, L Xu, L Xia, M Zhang, M Zhang… - Nature, 2025 - nature.com
General reasoning represents a long-standing and formidable challenge in artificial intelligence
(AI). Recent breakthroughs, exemplified by large language models (LLMs) 1 , 2 and …