User profiles for "author:Gruening B"

Björn Grüning

University of Freiburg
Verified email at informatik.uni-freiburg.de
Cited by 37687

A Galaxy of informatics resources for MS-based proteomics

S Mehta, M Bernt, M Chambers, M Fahrner… - Expert review of …, 2023 - Taylor & Francis
Introduction Continuous advances in mass spectrometry (MS) technologies have enabled
deeper and more reproducible proteome characterization and a better understanding of …

SuperScent—a database of flavors and scents

M Dunkel, U Schmidt, S Struck, L Berger… - Nucleic acids …, 2009 - academic.oup.com
Volatiles are efficient mediators of chemical communication acting universally as attractant,
repellent or warning signal in all kingdoms of life. Beside this broad impact volatiles have in …

SuperToxic: a comprehensive database of toxic compounds

U Schmidt, S Struck, B Gruening… - Nucleic acids …, 2009 - academic.oup.com
Within our everyday life, we are confronted with a variety of toxic substances of natural or
artificial origin. Toxins are already used, eg in medicine, but there is still an increasing …

Recommendations for the packaging and containerizing of bioinformatics software

B Gruening, O Sallou, P Moreno… - …, 2019 - pmc.ncbi.nlm.nih.gov
Software Containers are changing the way scientists and researchers develop, deploy and
exchange scientific software. They allow labs of all sizes to easily install bioinformatics …

Voronoia: analyzing packing in protein structures

K Rother, PW Hildebrand, A Goede… - Nucleic acids …, 2009 - academic.oup.com
The packing of protein atoms is an indicator for their stability and functionality, and applied in
determining thermostability, in protein design, ligand binding and to identify flexible regions …

Survey of metaproteomics software tools for functional microbiome analysis

R Sajulga, C Easterly, M Riffle, B Mesuere, T Muth… - PLoS …, 2020 - journals.plos.org
To gain a thorough appreciation of microbiome dynamics, researchers characterize the
functional relevance of expressed microbial genes or proteins. This can be accomplished …

SuperLooper—a prediction server for the modeling of loops in globular and membrane proteins

PW Hildebrand, A Goede, RA Bauer… - Nucleic acids …, 2009 - academic.oup.com
SuperLooper provides the first online interface for the automatic, quick and interactive
search and placement of loops in proteins (LIP). A database containing half a billion …

[HTML][HTML] Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework

C Blank, C Easterly, B Gruening, J Johnson… - Proteomes, 2018 - mdpi.com
The impact of microbial communities, also known as the microbiome, on human health and
the environment is receiving increased attention. Studying translated gene products …

Toxicity versus potency elucidation of toxicity properties discriminating between toxins, drugs, and natural compounds

S Struck, U Schmidt, B Gruening, IS Jaeger… - Genome …, 2008 - jstage.jst.go.jp
Within our everyday life we are confronted with a variety of toxic substances. A number of
these compounds are already used as lead structures for the development of new drugs, but …

Metaproteomics analysis of SARS-CoV-2-infected patient samples reveals presence of potential coinfecting microorganisms

PS Thuy-Boun, S Mehta, B Gruening… - Journal of Proteome …, 2021 - ACS Publications
In this Letter, we reanalyze published mass spectrometry data sets of clinical samples with a
focus on determining the coinfection status of individuals infected with SARS-CoV-2 …