User profiles for "author:Gruening B"
Björn GrüningUniversity of Freiburg Verified email at informatik.uni-freiburg.de Cited by 37687 |
A Galaxy of informatics resources for MS-based proteomics
Introduction Continuous advances in mass spectrometry (MS) technologies have enabled
deeper and more reproducible proteome characterization and a better understanding of …
deeper and more reproducible proteome characterization and a better understanding of …
SuperScent—a database of flavors and scents
Volatiles are efficient mediators of chemical communication acting universally as attractant,
repellent or warning signal in all kingdoms of life. Beside this broad impact volatiles have in …
repellent or warning signal in all kingdoms of life. Beside this broad impact volatiles have in …
SuperToxic: a comprehensive database of toxic compounds
U Schmidt, S Struck, B Gruening… - Nucleic acids …, 2009 - academic.oup.com
Within our everyday life, we are confronted with a variety of toxic substances of natural or
artificial origin. Toxins are already used, eg in medicine, but there is still an increasing …
artificial origin. Toxins are already used, eg in medicine, but there is still an increasing …
Recommendations for the packaging and containerizing of bioinformatics software
B Gruening, O Sallou, P Moreno… - …, 2019 - pmc.ncbi.nlm.nih.gov
Software Containers are changing the way scientists and researchers develop, deploy and
exchange scientific software. They allow labs of all sizes to easily install bioinformatics …
exchange scientific software. They allow labs of all sizes to easily install bioinformatics …
Voronoia: analyzing packing in protein structures
K Rother, PW Hildebrand, A Goede… - Nucleic acids …, 2009 - academic.oup.com
The packing of protein atoms is an indicator for their stability and functionality, and applied in
determining thermostability, in protein design, ligand binding and to identify flexible regions …
determining thermostability, in protein design, ligand binding and to identify flexible regions …
Survey of metaproteomics software tools for functional microbiome analysis
To gain a thorough appreciation of microbiome dynamics, researchers characterize the
functional relevance of expressed microbial genes or proteins. This can be accomplished …
functional relevance of expressed microbial genes or proteins. This can be accomplished …
SuperLooper—a prediction server for the modeling of loops in globular and membrane proteins
PW Hildebrand, A Goede, RA Bauer… - Nucleic acids …, 2009 - academic.oup.com
SuperLooper provides the first online interface for the automatic, quick and interactive
search and placement of loops in proteins (LIP). A database containing half a billion …
search and placement of loops in proteins (LIP). A database containing half a billion …
[HTML][HTML] Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework
C Blank, C Easterly, B Gruening, J Johnson… - Proteomes, 2018 - mdpi.com
The impact of microbial communities, also known as the microbiome, on human health and
the environment is receiving increased attention. Studying translated gene products …
the environment is receiving increased attention. Studying translated gene products …
Toxicity versus potency elucidation of toxicity properties discriminating between toxins, drugs, and natural compounds
S Struck, U Schmidt, B Gruening, IS Jaeger… - Genome …, 2008 - jstage.jst.go.jp
Within our everyday life we are confronted with a variety of toxic substances. A number of
these compounds are already used as lead structures for the development of new drugs, but …
these compounds are already used as lead structures for the development of new drugs, but …
Metaproteomics analysis of SARS-CoV-2-infected patient samples reveals presence of potential coinfecting microorganisms
In this Letter, we reanalyze published mass spectrometry data sets of clinical samples with a
focus on determining the coinfection status of individuals infected with SARS-CoV-2 …
focus on determining the coinfection status of individuals infected with SARS-CoV-2 …