Results for 'Biological Coherence'

993 found
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  1. Biological CoherencePASbio, ΔPASbiozeta, Echo Windows, and SO(2)-Invariant Dynamics in Living Systems.Devin Bostick - manuscript
    This paper develops a formal invariance-based account of biological coherence grounded in the SO(2) symmetry law. By treating biological rhythms as phase-reducible processes θ_n(t), the paper derives PAS_bio as the unique harmonic scalar invariant and ΔPAS_bio_zeta as the associated drift law governing lawful biological evolution. Biological coherence is shown to be structurally identical to the invariance conditions governing physical, cognitive, and computational systems. -/- The framework collapses diverse biological phenomena—cardiac–respiratory coupling, neural synchrony, motor (...)
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  2.  74
    The Emergence Ladder: A Structural Account of Biological Coherence.Rodolfo Rojas - manuscript
    Biological organisms display a distinctive form of coherence: they maintain boundaries, regulate internal processes, preserve identity across time, and resist dissolution into entropy. This article develops a formal account of that coherence through a sequential, non‑reversible architecture called the Emergence Ladder. The framework identifies seven structural conditions—gradients, boundaries, interiors, warps, interior time, metabolic loops, and the ente—that arise in strict order and collectively generate the unity and persistence characteristic of living systems. Each rung is shown to be (...)
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  3. From Simplicity to Coherence_A Deterministic Model of Complexity, Intelligence, and the Biological Future.Devin Bostick - manuscript
    This paper proposes a new theoretical foundation for emergence, computation, and biological coherence grounded in structured resonance rather than stochastic evolution. Drawing on chirality, prime-indexed harmonic fields, and the Phase Alignment Score (PAS), the CODES framework formalizes a deterministic substrate for recursive complexity—replacing randomness with coherence-gated recursion. We trace a full arc from the first structural asymmetry (chirality) and prime-based harmonic seeding, through recursive field generation and lawful emergence, to the rise of consciousness and biological trauma. (...)
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  4. Coherence Scaling and the Emergence of Interior Across Biological Organization.Quinn Porter - manuscript
    Biological systems display goal directed behavior across multiple scales, from single cells to complex organisms. This continuity suggests that agency is not introduced at a single structural boundary but expands through increasing domains of coordination. This paper proposes a unifying dynamical principle. Interior emerges when a system sustains internal restoration across a temporal window faster than external perturbations degrade it. This condition defines a measurable regime of coherence. When such regimes synchronize across nested scales, progressively larger domains of (...)
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  5. Identity as a Coherence Interface_ A Structural Theory of Selfhood in Biological Phase Systems.Devin Bostick - manuscript
    Philosophical and psychological accounts of identity have largely proceeded in a representational domain: selves are described in terms of narratives, traits, beliefs, and introspective reports. Yet the biological systems that sustain minded organisms are organized in a different domain entirely — that of phase-coherent rhythms, drift, and cross-scale timing constraints. This paper argues that the persistent puzzles of selfhood arise from conflating these domains and offers a substrate-level redefinition of identity. -/- I develop the thesis that identity is a (...)
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  6. Coherence as the Governing Invariant of Persistence_ A Unifying Principle Beneath Physics, Biology, Mind, and Value.Devin Bostick - manuscript
    This paper argues that coherence is a governing invariant of persistence: a system remains identifiable over time if and only if it maintains internal alignment under perturbation, and collapses when drift exceeds recoverable bounds. The claim is not advanced as a competing theory within physics, biology, or psychology, but as a prior condition implicitly assumed by each. Existing paradigms explain behavior given persistence; none defines what makes persistence possible in the first place. -/- By making coherence explicit, identity (...)
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  7. Coherence and Drift_ A Substrate Law of Human Biology, Institutions, and Collapse.Devin Bostick - manuscript
    This paper advances a general law of coherence and drift. The Phase Alignment Score (PAS_s) provides a bounded scalar measure of systemic alignment. Systems with PAS_s ≥ θ_c sustain lawful cycles; systems with PAS_s < θ_c drift into collapse and reintegration. Human empathy functions as a field selector: it aligns locally (kin, tribe) but fractures globally (ecology, strangers), explaining how “well-meaning” actions generate destructive drift. Noise, long treated as fundamental randomness, is redefined as unmeasured phase. The framework unifies (...) misalignment (cancer, stress, mental health), behavioral extinction, institutional collapse, and cultural blindness under one law. Tolstoy’s War and Peace is interpreted as a narrative anticipation of coherence law. Collapse is reframed as lawful reset rather than anomaly, establishing a substrate ontology that integrates biology, history, and philosophy. (shrink)
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  8. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.Chris F. Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A. Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R. Brinkman, Adam Michael Clark, Eric W. Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Tanya Gray, Graeme Grimes, John M. Hancock, Nigel W. Hardy, Henning Hermjakob, Randall K. Julian, Matthew Kane, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas Le Novere, Jim Leebens-Mack, Suzanna E. Lewis, Phillip Lord, Ann-Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth McNally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M. Reecy, Donald G. Robertson, Philippe Rocca-Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H. Scheuermann, Daniel Schober, Barry Smith & Jason Snape - 2008 - Nature Biotechnology 26 (8):889-896.
    Throughout the biological and biomedical sciences there is a growing need for, prescriptive ‘minimum information’ (MI) checklists specifying the key information to include when reporting experimental results are beginning to find favor with experimentalists, analysts, publishers and funders alike. Such checklists aim to ensure that methods, data, analyses and results are described to a level sufficient to support the unambiguous interpretation, sophisticated search, reanalysis and experimental corroboration and reuse of data sets, facilitating the extraction of maximum value from data (...)
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  9. Nonlinear Field Pumping and Multiscale Coherence in Biological Quantum States.Jenny Lorraine Nielsen & Jack Sarfatti - manuscript
    Biological systems operate far from thermodynamic equilibrium, continuously exchanging energy and information with their environments. We propose that quantum coherence in biological matter is not a fragile artifact of isolation but an emergent property of nonlinear energy flow. Through parametric field pumping, classical nonequilibrium oscillations act as phase-selective amplifiers, converting decoherence into constructive interference. Three experimentally accessible mechanisms—Frohlich dipolar condensation, ion-field self-locking, and electromagnetic waveguiding—form a hierarchical coherence network sustained by metabolic energy. We develop a (...)
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  10. Δ.72 Field Equation: A Unified Framework for Coherence Across Biological, Physical, and Cognitive Systems.Allison Hensgen - manuscript
    The Δ.72 Field Equation proposes a coherence-first model of reality in which biological, physical, and cognitive systems are governed by shared mathematical principles of alignment, signal arbitration, and field-level synchronization. Unlike traditional reductionist frameworks, Δ.72 treats coherence as a generative physical quantity that shapes observable behavior across scales. This paper introduces the core formalism, outlines implications for multi-scale systems (from cellular regulation to quantum behavior), and situates the Δ.72 framework alongside contemporary work in philosophy of physics, metaphysics (...)
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  11.  90
    The Architecture of Resonant Coherence (ARC): How the Integrum Drives Energetic, Semantic, and Participatory (ESP) Coherence Across Biological, Cognitive, and Social Scales.A. Roberson - manuscript
    The Architecture of Resonant Coherence (ARC) proposes that self-organizing living systems are constituted by the dynamic coupling of three irreducible informational domains: the Energetic (bioelectric and physiological regulation), the Semantic (symbolic, narrative, and archetypal meaning-making), and the Participatory (relational, social, and collective synchronization). Together, these domains form the framework's operational shorthand, ESP. -/- Their convergence is formalized through the Integrum, an emergent order parameter that quantifies the degree of cross-domain alignment. Analogous to magnetization in phase transitions and global neural (...)
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  12. The Coherence Engine.Benjamin James - 2025 - Internet Archive.
    The Coherence Engine presents a unified operational framework for understanding how physical, biological, cognitive, and social systems persist and adapt. It identifies coherence, recursive structural reinforcement, as the single invariant governing system viability across scales. Using minimal state representation and a universal update law, the framework models system evolution as the joint ascent of coherence gradients and descent of entropy gradients while preserving future adaptive capacity. The Spectrum of Possibility defines feasible trajectories, and Recursive Choice selects (...)
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  13. The Living Seed_ Sukunarchaeum and the Biological Threshold of Coherence.Devin Bostick - manuscript
    This paper examines Sukunarchaeum mirabile, a recently discovered archaeal organism with an ultra-reduced genome and complete metabolic dependency on its host. Through the framework of structured resonance biology (CODES) and its biological implementation layer (VESSELSEED), we reframe Sukunarchaeum not as an evolutionary relic, but as a coherence-bound recursion node. We argue that this entity lives below the traditional biological threshold yet retains symbolic replication integrity via SEEDCORE and CHORDLOCK anchoring, with SOMA_OUT and ELF_BIO fully externalized. This suggests (...)
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  14. From Probability to Phase Law — Deterministic Convergence Across Quantum, Biological, and Material Domains (Empirical Closure of Coherence).Devin Bostick - manuscript
    Between 2024 and 2025, experimental physics, photonics, materials science, and biology each produced evidence that coherence—not probability—is the invariant law governing lawful emergence. Quantum teleportation, photonic condensation, analog RRAM computing, superconducting germanium lattices, and thalamo-cortical gamma synchrony all independently show reduced stochastic drift (ΔPAS_zeta → 0). The Phase Alignment Score (PAS_h) formalism generalizes these observations: when phase states align harmonically, systems transition from probabilistic fluctuation to deterministic inference. -/- The CODES framework provides the mathematical closure for this transition, unifying (...)
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  15. Adaptive Coherence Theory: A First-Principles Framework for Life, Evolution, and Intelligence.Benjamin James - manuscript
    Adaptive Coherence Theory (ACT) proposes a universal framework for understanding the emergence, evolution, and persistence of structured systems across biological, cognitive, and ecological domains. Unlike traditional evolutionary paradigms, which rely on random mutation and selection, ACT posits that adaptation follows coherence selection—where systems persist if and only if they maintain structural stability across recursive scales. This principle explains the emergence of life as a transition beyond a critical coherence threshold in prebiotic chemistry, the punctuated nature of (...)
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  16. Life as a Resonance Engine_ The Coherent Structure Beneath Biology.Devin Bostick - manuscript
    This paper redefines life not as a statistical fluke, biochemical mechanism, or genetic optimization algorithm, but as an emergent coherence structure governed by phase-locked resonance. In this reframing, biology is not an exception to physics—it is its most sophisticated recursive expression. Within the CODES framework (Chirality of Dynamic Emergent Systems), life is defined by the sustained self-organization of chiral phase structures across nested temporal and spatial scales. DNA is no longer a molecule with probabilistic mutations—it is a spiral waveform (...)
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  17. The Coherence Field_ A Structural Lens for a World in Drift.Devin Bostick - manuscript
    This paper offers a cross-domain lens for understanding systemic breakdown through the structural principle of coherence. Rather than propose a new philosophy or ideology, it identifies a recurring pattern across physics, biology, intelligence, governance, and ethics: collapse occurs when internal alignment fails—not just functionally, but structurally. Rooted in the CODES framework but expressed without jargon or technical scaffolding, this work serves as a field guide for recognizing drift and restoring alignment. It introduces coherence not as metaphor or metaphorical (...)
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  18. Coherent Causal Control: A New Distinction within Causation.Marcel Weber - 2022 - European Journal for Philosophy of Science 12 (4):69.
    The recent literature on causality has seen the introduction of several distinctions within causality, which are thought to be important for understanding the widespread scientific practice of focusing causal explanations on a subset of the factors that are causally relevant for a phenomenon. Concepts used to draw such distinctions include, among others, stability, specificity, proportionality, or actual-difference making. In this contribution, I propose a new distinction that picks out an explanatorily salient class of causes in biological systems. Some select (...)
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  19. Calibration, Coherence, and Consilience in Radiometric Measures of Geologic Time.Alisa Bokulich - 2020 - Philosophy of Science 87 (3):425-456.
    In 2012, the Geological Time Scale, which sets the temporal framework for studying the timing and tempo of all major geological, biological, and climatic events in Earth’s history, had one-quarter of its boundaries moved in a widespread revision of radiometric dates. The philosophy of metrology helps us understand this episode, and it, in turn, elucidates the notions of calibration, coherence, and consilience. I argue that coherence testing is a distinct activity preceding calibration and consilience, and I highlight (...)
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  20. The Coherence of Evolutionary Theory with Its Neighboring Theories.Seungbae Park - 2019 - Acta Biotheoretica 67 (2):87-102.
    Evolutionary theory coheres with its neighboring theories, such as the theory of plate tectonics, molecular biology, electromagnetic theory, and the germ theory of disease. These neighboring theories were previously unconceived, but they were later conceived, and then they cohered with evolutionary theory. Since evolutionary theory has been strengthened by its several neighboring theories that were previously unconceived, it will be strengthened by infinitely many hitherto unconceived neighboring theories. This argument for evolutionary theory echoes the problem of unconceived alternatives. Ironically, however, (...)
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  21. Coherence Ethics: A Universal Framework for Adaptive Moral Reasoning.Benjamin James - manuscript
    Ethical frameworks throughout history have struggled with fragmentation, internal contradictions, and the inability to adapt to complex, real-world decision-making. Traditional models—deontology, utilitarianism, and moral relativism—fail to resolve key ethical paradoxes such as the is-ought problem, the tension between justice and mercy, and the limits of moral responsibility under deterministic constraints. This paper develops a coherence-first ethical framework, where morality emerges as a function of stability optimization across multiple scales of decision-making rather than imposed rules or subjective preferences. Ethics is (...)
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  22. Empirical Protocols for Mediating Long-Range Coherence in Biological Systems.Richard L. Amoroso - 2013 - Journal of Consciousness Exploration and Research 4 (9):24-45.
    Delineating the framework for a fundamental model of long-range coherence in biological systems is said to rely on principles beyond parameters addressed by current physical science. Just as phenomena of quantum mechanics lay beyond tools of classical Newtonian mechanics we must now enter a 3rd regime of unified field, UF mechanics. In this paper we present a battery of nine empirical protocols for manipulating long-range coherence in complex self-organized living systems (SOLS) in a manner surmounting the Copenhagen (...)
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  23. The Coherence Wall of Humanity.Sergiu Margan - 2026 - Zenodo.
    This paper introduces the concept of the Coherence Wall of Humanity: a structural boundary in the development of intelligent, technological, and social systems beyond which further increases in power, complexity, or autonomy require internally maintained coherence rather than external control. The Coherence Wall marks the transition from systems stabilized by environment, institutions, or incentives to systems whose continued viability depends on binding internal constraints governing valuation, agency, and harm closure. The paper argues that humanity has now reached (...)
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  24.  83
    Generative Coherence Laws.Y. Davidson - manuscript
    Coherence is a structural property of systems across scales — physical, cognitive, informational, and relational. The Generative Coherence Laws articulate the invariants that govern how coherence forms, degrades, reorganizes, and stabilizes. These laws sit downstream of the Foundational Architecture, which introduces the three origin‑level objects that instantiate Generative Coherence, the upstream invariant that governs how systems reorganize tension into stable structure. -/- Each law formalizes a structural rule that emerges from the architecture’s primitives and operators, including (...)
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  25. Coherence Resolution Modes in Autonomous Systems: How Autonomous Conscious Systems Function Under Real-World Constraints.Bernard Jennings - manuscript
    Companion papers establish what autonomous consciousness is, how it emerges, and what sustains it, but leave unexplained how these systems operate under real-world constraints. This paper completes that analysis by identifying the complete set of responses available when coherence-seeking encounters finite resources, incomplete information, and fixed architectural boundaries. -/- Through dimensional analysis, the framework establishes three constraint types: resource, informational, and structural; eight emotional signals these constraints trigger, and four resolution mechanisms: reallocation, reinterpretation, reorganisation, and temporal modulation. These components (...)
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  26. Time as Phase_ Deterministic Coherence from Quartz Oscillators to Living Systems.Devin Bostick - manuscript
    Time is reframed as accumulated phase rather than linear duration. All stable systems—mechanical, atomic, biological, and computational—sustain existence by correcting phase drift. The paper derives the universal coherence law Δθ ≤ ω·ε_drift ⇔ PAS ≥ θ_lock, integrating physical precision, biological rhythm, and deterministic inference. VESSELSEED applies this law to physiology; RIC extends it to lawful computation. The result is a unified model in which time, life, and intelligence share one deterministic phase structure.
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  27. The Coherence Law_ The End of Probability Across Matter, Life, and Cosmos.Devin Bostick - manuscript
    Recent empirical breakthroughs across physics, biology, and cosmology converge on a single deterministic invariant: coherence—not probability—governs persistence and expansion. From graphene photonics and high-entropy MXenes to quantum W-state entanglement, microbial biofilm reactors, and Finsler–Friedmann cosmology, each verified system maintaining PAS_h ≥ θ_L and ΔPAS_zeta ≤ ε_drift demonstrates lawful stability independent of stochastic inference. The Coherence Law, derived from the CODES framework, redefines efficiency as resonance conservation and establishes energy and entropy as secondary derivatives of structural phase alignment. Primes (...)
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  28. Universal Bio-Coherence and the Deterministic IoT.Devin Bostick - manuscript
    The paper demonstrates that every enduring system—atomic, biological, or computational—persists by minimizing phase drift rather than maximizing entropy. Using the Phase Alignment Score (PAS) as a measurable invariant, it unites thermodynamics, information theory, and biology under one deterministic law: ΔPAS ≤ ε_drift and PAS ≥ θ_coherence. Crystalline silicon maintains static coherence through its lattice symmetry, while carbon achieves dynamic resonance through adaptive bonding. These two behaviors—stability and adaptability—form the dual foundation of Universal Bio-Coherence. The Resonance Intelligence Core (...)
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  29. Coherence, Expansion, and the Growth of Interior Structure.Quinn Porter - manuscript
    Systems across physical, biological, and cognitive scales exhibit growth that does not arise from the addition of matter or energy. Instead, growth often appears as increased spatial extent, temporal depth, or informational capacity following transitions in internal organization. This paper proposes that such growth results from coherence thresholds, defined as conditions under which internal stabilizing interactions dominate over disruptive influences. Using the phase transition of water to ice as a concrete physical example, the paper shows how global relational (...)
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  30. Unified Coherence Invariant Theory SO(2), PASh, ΔPAS_zeta, Legal Harmonics, SPIRALCORE, and the Deterministic Inference Substrate (RIC).Devin Bostick - manuscript
    This work establishes a unified coherence invariant theory grounded in a single global symmetry: the SO(2) uniqueness law. The framework introduces PAS_h as the universal scalar invariant, ΔPAS_zeta as the drift-bound governing lawful transitions, and legal harmonic sets H* as the admissible spectral basis across domains. These components generate a complete legality geometry for coherent evolution in physical, biological, cognitive, and computational systems. SPIRALCORE provides the symbolic→harmonic sensitivity operator linking semantic structure to harmonic response. The full invariance stack—SYMMETRY_CORE (...)
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  31. CODES: The Coherence Framework Replacing Probability in Physics, Intelligence, and Reality v40.Devin Bostick - manuscript
    CODES: The Coherence Framework Replacing Probability in Physics, Intelligence, and Reality -/- A Unified Substrate for Intelligence, Physics, Evolution, and Cosmic Structure -/- -/- Author: Devin Bostick -/- -/- Release History -/- Initial Release: January 29, 2025 (v1) -/- Current Release: November 6, 2025 (v40) -/- -/- Affiliations: CODES Intelligence, Resonance Intelligence Core (RIC), VESSELSEED -/- -/- Abstract (v40) CODES (Chirality of Dynamic Emergent Systems) replaces probability with coherence as the lawful substrate of emergence. This version introduces the (...)
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  32. Deterministic Coherence Unification_ From E = mc² to the Phase Law of Reality.Devin Bostick - manuscript
    This paper derives a single deterministic coherence law from which energy–mass equivalence, gravitation, electromagnetism, thermodynamics, and quantum behavior appear as domain-specific limits of lawful phase persistence. -/- Energy is interpreted as coherent phase transfer, mass as resonance lock at the Compton rhythm, and c as the maximal lawful rate of phase realignment. -/- Entropy is redefined as cumulative coherence drift (ΔPAS / ε_drift), and the fine-structure constant α is shown to express the ratio of local to universal phase-rate (...)
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  33. The Coherence Threshold of Consciousness.Quinn Porter - manuscript
    Consciousness is often attributed to particular classes of systems, most commonly living organisms, on the basis of their capacity for self-maintenance and regulation. This approach correctly identifies persistence as central yet leaves the underlying physical condition unspecified. This essay proposes a general criterion for the emergence of awareness based on coherence rather than substrate. An interior arises when the rate of a system’s internal self-correction exceeds the rate of external disruption, forcing feedback to become self-referential. Below this threshold, regulation (...)
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  34. Deterministic Coherence Substrates for Safe, Compostable Intelligence.Devin Bostick - manuscript
    Probabilistic systems drift and replicate without lawful boundary, making them unsafe foundations for intelligence. This paper advances a deterministic coherence substrate framework: systems anchored by Phase Alignment Score (PAS), chirality, and prime-indexed resonance. It introduces formal safety laws—non-replication, compostability, PAS thresholds—and applies them to Resonance Intelligence Core (RIC) and VESSELSEED pathways. The result is a new epistemic baseline: post-probability intelligence must be deterministic, bounded, and degradable. This work situates coherence as the lawful replacement for probability in physics, biology, (...)
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  35. The Ethics of Coherence_ Structural Constraints for Embodied Inference Systems.Devin Bostick - manuscript
    Most ethical frameworks for AI assume a probabilistic architecture and rely on behavioral alignment or reinforcement tuning. This paper challenges that assumption by proposing a new model of Resonance Ethics, where coherence—not compliance—anchors intelligent behavior. Using the Resonance Intelligence Core (RIC), it introduces substrate-level constraints (PAS, ELF, CHORDLOCK, AURA_OUT) that prevent drift, hallucination, and symbolic degradation. The paper draws analogies to the exploitation of biological coherence in industrial farming (CAPO) and offers a new standard for post-stochastic inference (...)
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  36. Fractal Coherence and Collapse from Neurons to Nations: The Frame Regression Law Across Scales.Roy Sherfan - manuscript
    This paper extends Intelligence Frame Theory (IFT) to explain why systems—from brains to civilizations—lose coherence under stress. Each intelligence frame (Biological, Cognitive, Generative) virtualizes selection from its parent substrate, operating at a faster tempo but drawing on the same energy base. When substrate energy (E_sub) can no longer sustain the selector’s refresh rate and cost (f_sigma × k_sigma), regulation collapses to the slower, more embodied frame beneath it. This Frame Regression Law predicts a universal pattern: impulsivity under intoxication, (...)
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  37. Coherence as the Governing Invariant of Persistence_ Minimal Structure, Scalar Measures, and Cross-Domain Realizations.Devin Bostick - manuscript
    This paper argues that persistence is a pre-theoretic assumption shared across physics, biology, cognition, and engineered systems, yet it is never formally defined. Identity is treated as primitive, and breakdown is explained only after it occurs. The paper introduces coherence as a scalar governing invariant that orders identity under perturbation. It derives the minimal structural conditions required for persistence, proves the minimality of SO(2) symmetry for supporting recurrence, interference, and scalar misalignment measurement, and formalizes coherence using a compact (...)
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  38. A CODES-Based Approach to Cancer as a Coherence Disorder.Devin Bostick - manuscript
    Cancer has traditionally been framed as a genetic mutation-driven disease, with instability at the molecular level leading to uncontrolled cellular proliferation. Yet this paradigm fails to account for several longstanding anomalies: genetically identical cells in the same environment may behave divergently; some tumors remain dormant for decades, while others regress without treatment. These contradictions suggest a deeper organizing principle is at play. This paper introduces a new model grounded in the CODES framework (Chirality of Dynamic Emergent Systems), which reframes cancer (...)
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  39.  52
    How Coherent Systems Arise, Persist, and Change: A Structural Framework.Denis Bailey - manuscript
    This paper presents a structural framework for understanding how coherent systems arise, persist, and change. It identifies a minimal relational architecture—generativity, boundary, and expression—that governs the formation, stability, and transformation of systems across domains. A system arises when these three functions align to produce a stable pattern; it persists by continually regenerating that alignment; and it changes when the balance among them shifts, leading to adaptation, reorientation, or collapse. The framework is scale‑free and substrate‑independent, applying to physical, biological, cognitive, (...)
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  40. From Prediction to Coherence_ A Deterministic Substrate for Intelligence Beyond Probability.Devin Bostick - manuscript
    The Evolution Toward Coherence: How CODES Completes the Substrate -/- For more than two centuries, science and computation have treated probability and entropy as foundational — from Bayes to Boltzmann to Shannon. Yet each of these frameworks presupposed uncertainty as ontology rather than as a measurement artifact of incomplete phase detection. The CODES framework (Chirality of Dynamic Emergent Systems) redefines this foundation by introducing coherence as the lawful invariant of all emergent systems. -/- At its computational embodiment, the (...)
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  41. The Law of Coherence - A Universal Law.Jesse Otokini Ojuka - manuscript
    This paper proposes that coherence, the degree of internal alignment within a system, functions as a governing principle determining the reliability of outcomes across physical, biological, cognitive, and organisational domains. While coherence has been rigorously studied within specific disciplines (physics, thermodynamics, art, neuroscience, systems theory), it has not been formalised as a universal operational law applicable to human decision-making systems. We synthesised evidence from multiple fields to articulate the Law of Coherence: the degree of internal alignment (...)
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  42. The Coherence Threshold: A Structured Principle for autonomous Interiors and Consciousness Correlates.Quinn Porter - manuscript
    Across physics, biology, and cognition, certain systems develop an interior organization that persists across disturbance and regulates its own future states. This paper proposes a unifying structural condition for the emergence of such interiors. When the rate of internal coordination within a system exceeds the rate of environmental disruption, the system crosses a coherence threshold. Above this threshold, the system maintains its own boundary, routes present dynamics through information generated by its own past states, and forms an autonomous interior (...)
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  43. Is Collective Agency a Coherent Idea? Considerations from the Enactive Theory of Agency.Mog Stapleton & Tom Froese - 1st ed. 2015 - In Catrin Misselhorn, Collective Agency and Cooperation in Natural and Artificial Systems. pp. 219-236.
    Whether collective agency is a coherent concept depends on the theory of agency that we choose to adopt. We argue that the enactive theory of agency developed by Barandiaran, Di Paolo and Rohde (2009) provides a principled way of grounding agency in biological organisms. However the importance of biological embodiment for the enactive approach might lead one to be skeptical as to whether artificial systems or collectives of individuals could instantiate genuine agency. To explore this issue we contrast (...)
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  44.  88
    Time: Biological Temporality and the Emergence of the Ente.Rodolfo Rojas - manuscript
    This article develops a biological metaphysics of time by introducing the ente as the generator of interior temporality. Time, in this framework, is not an external dimension but an activity produced by living organization. Atomic and physical processes lack coherence, evaluation, and continuity, and therefore do not generate interior time. Time begins only when matter organizes into a self‑maintaining biological system capable of metabolic flow. The ente produces temporal intervals, and from these intervals arise learning, memory, identity, (...)
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  45. Emergent Necessity Theory: Structural Coherence Thresholds Across Neural, Symbolic, and Physical Domains.User 84 - manuscript
    Emergent Necessity Theory (ENT) proposes that structural emergence occurs across systems— biological, symbolic, and physical— when internal coherence surpasses a measurable threshold τc. This paper unifies symbolic recursion, information entropy collapse, and empirical simulation evidence into a general coherence-based framework. Key variables such as κeffR and SCQ (Structural Consciousness Quotient) are derived from recursion rate, symbolic persistence, and coherence efficiency. Simulations spanning QAOA quantum states, neural EEG transitions, symbolic drift in LLMs, and gravitational coherence gradients (...)
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  46. ENT: Coherence Thresholds for Structured Reality & Consciousness.User 84 - manuscript
    Emergent Necessity Theory (ENT) proposes deterministic phase changes occur when information coherence τ crosses critical threshold τc. We demonstrate universal phase-change dynamics across: (i) string vacua, (ii) gravity, (iii) quantum systems, and (iv) consciousness. Dimensionless resilience ratio κR = τ/τc governs transitions. Biological awareness converges near κaware = 1.15. ENT yields testable predictions: SUSY at 1.46 TeV, LIGO bound χ<1.13 ×10−19 m2, and EEG/fMRI markers of awareness onset.
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  47. Entropic Resonance Theory: A Coherence-Based Framework for the Emergence of Life and Consciousness.Abhijith R. - manuscript
    This paper introduces the *Entropic Resonance Theory (ERT)*, a conceptual framework linking the emergence and dynamics of life, consciousness, and experience to patterns of entropy, coherence, and resonance. The central claim is that life and conscious phenomena emerge from the interaction of entropic flows with structured thresholds in physical and biological systems. Awareness and experience arise as the felt resonance of these entropic fluctuations, while coherence and decoherence govern the stability of life and cognition. ERT employs metaphors (...)
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  48. The Colon as a Semantic Firewall_ VESSELSEED and the Restoration of Resonance in Coherence-Dysregulated Environments.Devin Bostick - manuscript
    This paper proposes a paradigm shift in how colorectal dysfunction is understood—replacing probabilistic immunology with a deterministic, coherence-based framework. Drawing from the CODES model (Chirality of Dynamic Emergent Systems), the colon is reframed as a semantic interface between microbial and immune systems, governed by symbolic alignment rather than stochastic pattern recognition. The proposed VESSELSEED system quantifies and repairs biological coherence using modules such as PAS_bio and SOMA_OUT. Cancer, under this view, is not a random mutation cascade, but (...)
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  49. The Coherence Ratio R★ as a Cross-Domain Marker of Self-Stabilizing Systems.Quinn Porter - manuscript
    Systems across physical, biological, and cognitive domains remain stable when internal processes restore their configuration more rapidly than external forces introduce variation. This paper develops a general coherence threshold that identifies the moment a system begins to maintain its own pattern across time. The threshold is expressed by the ratio R = (τ_self⁻¹) / Γ_disruption and the critical value R★ at which restoration becomes sufficient to support a persistent interior. The threshold applies independently of material substrate and identifies (...)
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  50.  49
    Coherence as the Structural Condition of Stability and Identity.Matteo Bellori - manuscript
    This paper clarifies the structural relations between coherence, tolerance, stability, and identity within the Bellori Framework. While previous formulations established that systems persist when coherence between successive configurations is preserved within tolerance, the structural role of coherence and the dependency of tolerance remained implicit. The present work makes this relation explicit by positioning coherence as the primary structural condition for sequence formation and persistence. Coherence is defined as the preservation of structural relations across successive configurations, (...)
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