{"id":"https://openalex.org/W4405767560","doi":"https://doi.org/10.48550/arxiv.2412.17240","title":"Rethinking Cancer Gene Identification through Graph Anomaly Analysis","display_name":"Rethinking Cancer Gene Identification through Graph Anomaly Analysis","publication_year":2024,"publication_date":"2024-12-23","ids":{"openalex":"https://openalex.org/W4405767560","doi":"https://doi.org/10.48550/arxiv.2412.17240"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2412.17240","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2412.17240","pdf_url":"https://arxiv.org/pdf/2412.17240","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2412.17240","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005226015","display_name":"Yilong Zang","orcid":"https://orcid.org/0000-0001-8535-071X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zang, Yilong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045261755","display_name":"Lingfei Ren","orcid":"https://orcid.org/0000-0002-3756-3427"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ren, Lingfei","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100387860","display_name":"Yue Li","orcid":"https://orcid.org/0000-0003-3783-102X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Yue","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101627769","display_name":"Zhikang Wang","orcid":"https://orcid.org/0000-0001-9587-1965"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Zhikang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082269720","display_name":"David Selby","orcid":"https://orcid.org/0000-0001-8026-5663"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Selby, David Antony","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100401159","display_name":"Zheng Wang","orcid":"https://orcid.org/0000-0003-3419-1741"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Zheng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003185028","display_name":"Sebastian J. Vollmer","orcid":"https://orcid.org/0000-0003-2831-1401"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vollmer, Sebastian Josef","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088492734","display_name":"Hongzhi Yin","orcid":"https://orcid.org/0000-0003-1395-261X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yin, Hongzhi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012709797","display_name":"Jiangning Song","orcid":"https://orcid.org/0000-0001-8031-9086"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Song, Jiangning","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5088681337","display_name":"Junhang Wu","orcid":"https://orcid.org/0000-0003-0297-4995"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wu, Junhang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5614649057388306},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.46628710627555847},{"id":"https://openalex.org/keywords/anomaly","display_name":"Anomaly (physics)","score":0.44886860251426697},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4406053423881531},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36766332387924194},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3448718786239624},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.30469632148742676},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1438269019126892},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10670813918113708},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.06587648391723633}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5614649057388306},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.46628710627555847},{"id":"https://openalex.org/C12997251","wikidata":"https://www.wikidata.org/wiki/Q567560","display_name":"Anomaly (physics)","level":2,"score":0.44886860251426697},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4406053423881531},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36766332387924194},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3448718786239624},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30469632148742676},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1438269019126892},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10670813918113708},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.06587648391723633},{"id":"https://openalex.org/C26873012","wikidata":"https://www.wikidata.org/wiki/Q214781","display_name":"Condensed matter physics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:arXiv.org:2412.17240","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2412.17240","pdf_url":"https://arxiv.org/pdf/2412.17240","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/112013","is_oa":false,"landing_page_url":"http://hdl.handle.net/10397/112013","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Paper"},{"id":"doi:10.48550/arxiv.2412.17240","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2412.17240","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2412.17240","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2412.17240","pdf_url":"https://arxiv.org/pdf/2412.17240","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405767560.pdf","grobid_xml":"https://content.openalex.org/works/W4405767560.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2518757014","https://openalex.org/W2898732673","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W3123203398","https://openalex.org/W2895576619","https://openalex.org/W4386248440","https://openalex.org/W2006730775","https://openalex.org/W1972473893"],"abstract_inverted_index":{"Graph":[0,138],"neural":[1],"networks":[2,12],"(GNNs)":[3],"have":[4],"shown":[5],"promise":[6],"in":[7,17,30,61,91],"integrating":[8],"protein-protein":[9],"interaction":[10,39,159],"(PPI)":[11],"for":[13,41],"identifying":[14],"cancer":[15,42,66,80,95],"genes":[16,43,67],"recent":[18],"studies.":[19],"However,":[20],"due":[21],"to":[22,68,114],"the":[23,27,45,99,103,109,115,125,128,136,151,162,177,181],"insufficient":[24],"modeling":[25],"of":[26,36,94,118,127,183],"biological":[28,59],"information":[29],"PPI":[31],"networks,":[32],"more":[33],"faithfully":[34],"depiction":[35],"complex":[37],"protein":[38,62,158],"patterns":[40],"within":[44,98],"graph":[46,70,76],"structure":[47],"remains":[48],"largely":[49],"unexplored.":[50],"This":[51],"study":[52],"takes":[53],"a":[54,74,122],"pioneering":[55],"step":[56],"toward":[57],"bridging":[58],"anomalies":[60],"interactions":[63],"caused":[64],"by":[65,79],"statistical":[69],"anomaly.":[71],"We":[72],"find":[73],"unique":[75],"anomaly":[77],"exhibited":[78],"genes,":[81],"namely":[82],"weight":[83,110],"heterogeneity,":[84],"which":[85],"manifests":[86],"as":[87],"significantly":[88],"higher":[89],"variance":[90],"edge":[92],"weights":[93],"gene":[96],"nodes":[97],"graph.":[100],"Additionally,":[101],"from":[102],"spectral":[104,119,146,152],"perspective,":[105,153],"we":[106,134],"demonstrate":[107,180],"that":[108,142],"heterogeneity":[111],"could":[112],"lead":[113],"\"flattening":[116],"out\"":[117],"energy,":[120],"with":[121],"concentration":[123],"towards":[124],"extremes":[126],"spectrum.":[129],"Building":[130],"on":[131,150,161,169],"these":[132],"insights,":[133],"propose":[135],"HIerarchical-Perspective":[137],"Neural":[139],"Network":[140],"(HIPGNN)":[141],"not":[143],"only":[144],"determines":[145],"energy":[147],"distribution":[148],"variations":[149],"but":[154],"also":[155],"perceives":[156],"detailed":[157],"context":[160],"spatial":[163],"perspective.":[164],"Extensive":[165],"experiments":[166],"are":[167],"conducted":[168],"two":[170],"reprocessed":[171],"datasets":[172],"STRINGdb":[173],"and":[174,176],"CPDB,":[175],"experimental":[178],"results":[179],"superiority":[182],"HIPGNN.":[184]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
